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AT5G40590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G44370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTT8eggNOG:ENOG41107J4EMBL:AB009052EMBL:BT010703
EMBL:BT010977EMBL:CP002688EnsemblPlants:AT5G40590EnsemblPlants:AT5G40590.1
entrez:834057GeneID:834057GO:GO:0047134Gramene:AT5G40590.1
hmmpanther:PTHR13871hmmpanther:PTHR13871:SF42HOGENOM:HOG000093099IntAct:Q9FM39
InterPro:IPR004146KEGG:ath:AT5G40590ncoils:CoilOMA:CEAKDEI
Pfam:PF03107Pfam:PF07649PhylomeDB:Q9FM39Proteomes:UP000006548
RefSeq:NP_198875.1SMR:Q9FM39STRING:3702.AT5G40590.1SUPFAM:SSF57889
TAIR:AT5G40590UniGene:At.30279UniProt:Q9FM39
Coordinates (TAIR10) chr5:-:16251609..16252313
Molecular Weight (calculated) 26378.20 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.63
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRQSVRHP SHNHPLRGHK CEAKDEIICS GCDLDLVGAA FKCTKSSDCD YFLHKSCFEL PRETNHKSHQ PHTLTLIYSP KSTYTCNACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)