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AT5G40500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.927
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ2GeggNOG:ENOG41122HWEMBL:AY065309EMBL:AY117310EMBL:CP002688EnsemblPlants:AT5G40500EnsemblPlants:AT5G40500.1
entrez:834048ExpressionAtlas:Q8VZ30GeneID:834048Gramene:AT5G40500.1hmmpanther:PTHR36397HOGENOM:HOG000012836OMA:EGQTYTI
PhylomeDB:Q8VZ30Proteomes:UP000006548RefSeq:NP_198866.2STRING:3702.AT5G40500.1TAIR:AT5G40500UniGene:At.28461UniProt:Q8VZ30
Coordinates (TAIR10) chr5:+:16227984..16228518
Molecular Weight (calculated) 14018.10 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.44
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVASNLAC IGKVTMSRAS SMVGWRLQIN CRKKEKGRDQ SHYPYKVIEI TPPPKSLGIR CLPHNLQCGE NVMIEGQTYT ISAVTHRYQL RKGKYEPSER
101: RLDVLSAARY VLNLYFDNLL QNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)