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AT5G40490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 237026 Blast hits to 70789 proteins in 2918 species: Archae - 339; Bacteria - 59623; Metazoa - 97059; Fungi - 16957; Plants - 23804; Viruses - 2447; Other Eukaryotes - 36797 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AB009052EMBL:AY136466EMBL:CP002688EnsemblPlants:AT5G40490EnsemblPlants:AT5G40490.1
entrez:834047Gene3D:3.30.70.330GeneID:834047GO:GO:0000166GO:GO:0003730GO:GO:0005829GO:GO:0006378
GO:GO:0019013GO:GO:0030529GO:GO:0048576GO:GO:0048578GO:GO:0097157Gramene:AT5G40490.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF318HOGENOM:HOG000234441InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT5G40490KO:K12741OMA:DPYGTET
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q9FM47PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_198865.1SMART:SM00360
SMR:Q9FM47STRING:3702.AT5G40490.1SUPFAM:SSF54928TAIR:AT5G40490UniGene:At.30284UniProt:Q9FM47
Coordinates (TAIR10) chr5:+:16225483..16227423
Molecular Weight (calculated) 42410.50 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.73
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)