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AT5G40480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 3012
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 3012 (EMB3012); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Invasin/intimin cell-adhesion (InterPro:IPR008964), Bacterial Ig-like, group 2 (InterPro:IPR003343); Has 264 Blast hits to 238 proteins in 89 species: Archae - 0; Bacteria - 31; Metazoa - 150; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:19297eggNOG:ENOG410XNNUeggNOG:KOG1833EMBL:AB017062
EMBL:CP002688EnsemblPlants:AT5G40480EnsemblPlants:AT5G40480.1entrez:834046
GeneID:834046Genevisible:F4KHD8GO:GO:0005643GO:GO:0015031
GO:GO:0016021GO:GO:0031965GO:GO:0051028Gramene:AT5G40480.1
hmmpanther:PTHR23019hmmpanther:PTHR23019:SF0InterPro:IPR003343InterPro:IPR008964
iPTMnet:F4KHD8KEGG:ath:AT5G40480KO:K14314ncoils:Coil
OMA:YFSAFIRPaxDb:F4KHD8Pfam:F4KHD8Pfam:PF02368
PRIDE:F4KHD8PRO:PR:F4KHD8ProteinModelPortal:F4KHD8Proteomes:UP000006548
RefSeq:NP_198864.2SMART:SM00635STRING:3702.AT5G40480.1SUPFAM:SSF49373
TAIR:AT5G40480tair10-symbols:EMB3012TMHMM:TMhelixUniGene:At.55277
UniProt:F4KHD8
Coordinates (TAIR10) chr5:+:16213361..16223982
Molecular Weight (calculated) 210677.00 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.04
Length 1923 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVPVSFCFFF LLLLLSAGES SSQLVSGPHI TDVNILLPPK MKNPVEYRLQ GSDGCFKWSW DHHDILSVTP EFNSSSHCST SARLRSISPY SGRKETAVYA
0101: TDIQTGMVIR CKVFIDNFSR IQIFHNSIKL DLDGLSMLRV RAFDNEDNEF SSLVGLQFIW KLMPESGGST HHLAHVPLKE SPLTDCGGLC GYLDIQKKLE
0201: DSGVFADLFV VKGTKIGHEK VSVHLLEAPL THIADEIVLT VAEAMSLEPR SPVYVLMGAS FGYTLKVMRG NVPQAVDLPS PHHRWSVLNS SVAQVDSLIG
0301: LTKALSLGVT TVVVEDTRVA GHIQGSSINV VTPDTLILYI SPWSMSGDLI TESKPFPSSM HWYVVSGRQY LIQMKIFSGR PDAHEIYITE TDDIKLYGKD
0401: SDYWKIVSLP DELSSEYGQR NSRILNAISP GLGELTSTLT YFSGHQESKE VLKVVQEIRV CEKVQFTLNS EDDTPKVLLP WTPAVYQEME LIVTGGCAKA
0501: SSDYKWFTSD ISILSVSAYG IIQAKRPGIA TVKVVSTFDS QNFDEVIVEV SIPSSMVMLQ NFPVETVVGS HLKAAVTMKA LNGATFSRCD AFNSLIKWKT
0601: GSESFVIVNA TSEMMMLDEL RSMDSSPPCS RASIYTASTG RTVLQATLAK EFHYFDKSLS ESIDLKATLT IGAYLPLSVR QDSDGNHHGG YWFDKAQEET
0701: DFGVSKLYLV PGTYVDVMLL GGPERWDDNV EFTETVKTLY EDEEDLTSRV NVHHEVDRRA NMYRISCQKL GSYKLVFLRG NLLGIDHPVP AVAEALLSVH
0801: CSLPSSVVLI VDEPVNKLDV IRAASQADRA PGRLRVTPVT VANGQIIRVA AVGISEFGEA FSNSSTLSLR WELTSCNNLA YWDDDYNSKM TKSGWERFLA
0901: LRNESGLCTV RATVSGIDYS FKSQYSTLLP QGSESTLTDA VRLQLVSTLR VTPEFNLVFF NPNAKVNLSM TGGSCLWEAV VNNSRVAEVI RPPSGLQCSQ
1001: MMLSPKGLGT TIVTVYDIGV SPPLSALALI KVADVDWIKI ASGDEISIME GSTHSIDLLT GIDDGMTFDS SQYSLMDIMV HIEDDLVEHV TVDEDSLSVG
1101: EHVATSSFKI AARRLGITTL YVSARQQSGG KVLSQTIKVE VYSPPRLHPQ GIFLVPGASY VLTIEGGPTM NVSVDYTTVD NEVAKIEKSG RLYATSPGNT
1201: TIYATIYGSE GAVICQAIGN AEVGLPATAM LVAQSDTVAV GHEMPVSPSF PEGDLLSFYE LCSAYKWTIE DEKVLIFIAS SINVEENAGF VNVVQGRSAG
1301: KTRVTIAFSC DFVSPGLYSE SRTYEASMIL SVVPDLPLSL GAPMTWVLPP FYTSSGLLPS SSEPQKHRDG QSHRGNIVYS ILKDCSSRAD FERDTISING
1401: GSVKTTDSNN VACIQAKDRT SGRIEIAACV RVAEVAQIRM KSEGIPFHVI DLAVGGELEL PINYYDTLGI PFLEAHGVTT YNVETNHRDV VFIKTVNDQP
1501: SAYIKGIKHG KALIRVSIGD NLRKSDYVLV SVGAHIFPQN PVIHTGNLLN FSITGADNEV TGQWFTSNRS VISVNVASGQ AKAISQGSTH VTFKGHGLKL
1601: QTKVTVLFGN TIYVDSPGET LTNVHVPAEG YKFPVKFREN KFAVTEHGNK ATFNCQVDPP FIGYTKPWMD LDTGNTYCLF FPYSPEHLVH SMSITKDMKP
1701: HVSFSVDASL KEARRVSGSA SALLIGGFSV TGPDKLNINP DSNTTIISLV GNTDVQIHCR NKGRLSISLI KRDDFGIAGH AQYKVNVLRS EQFTDRIIIT
1801: LPATGQIVEI DVCYDTGESL VASSKDGYSV LLKILWGVLV LVVSVIILMK VIDRQVPTGA TGTATYSGNA AQGTPERRSG TVIYHEESPR TPSPFMEYVK
1901: RTVDETPYYR REGRRRFNPQ NTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)