AT5G40470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 2544 Blast hits to 1647 proteins in 181 species: Archae - 0; Bacteria - 22; Metazoa - 1074; Fungi - 251; Plants - 934; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:16208255..16209745 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55045.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.19 | ||||||||||||||||||||||||||||
| Length | 496 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEILFDEIL CEIFTRLPSS SSSSSSSSSS LPSFESVPLV SKRWLRLYRA SKTSMSLQFS PHDTSVITLL PSILNNHPCL SSLSIYRGVT IGTTPSRSDE 101: EHLKAETIFS DELISIISSC CFNLRNLCFL INPVSSSSLV PLSTSLSLTS LSIELWKPQN SGFTWIALFS SLKELSIHVC STSSPAFDFY PKSKPNPEVV 201: ELGLESVSLF GIQPDDNDVT WLWKSCRKLK KLSLRSCGSI GEEIGLCLKN LEEIELRTCR SIVDVVLLKV SEICESLKSL LIHDGGSKDG LVQFMSNARC 301: YDTLERLDLR LPMDLTDDHL VSLAANFKCL STLRLTSCIF VTGFSLKALA LSFSSSLEEL SLLSCNAIER ERGLLATIGQ HLGRLRKLDL TRNEWLFDKE 401: VVSMLASCNG LVEVVLRDCK HLTGAVLVAL NKNCVKLKTL DILGCRLIEP DDVEGFVMKT QCLKKLVVEE NQITEAILKL ASSKFIETVV FDSLVW |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)