AT5G40450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16184799..16195513 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 323022.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 3.94 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.09 | ||||||||||||||||||||||||
| Length | 2889 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: METGVVTIQE PVSTKTDVGG VPAEVILEKS SMEVQKVNLS TVLDDEITSG ADRGNNIITG EADVAEVVNG SGDKETEELK RENGEATKTI SVLDDSKIVK 0101: DDQESIVVRE PQSLNEKKED EKIILSDVTL ENKKEEDTTG KPEEVSVEKP VIEEDQTEAK HSLEQEEDIG NISKVCEEIP IKTDEVREET DSRTVETSVN 0201: GTEAEHNATV SVEEISRNGD NTVNETVSED QTATDGEPLH DVETIKREAE PFYKTVVEDA KIVNTEETTA HESKILKEDN HQEEYAESVE ATKNSDAAEQ 0301: SSREVTVDKE KEEDIIQNIE EVQESPSVME SPTIQGEDIE SKASLDHEEE MDKITKDTEE QEHVLVRDVP VPQSETLVTE AKTAETFSVQ EAEILKTNIN 0401: ESEAHSAIGG EEDGQETKEN TEPSKDLKDD KEQEDSETVK TIISSDEVRS SDVQAEVFGE HTEPCSSEIK DDRHGRDESI EVKAKETGPE IETAVDGESV 0501: HEIETTERVL LEAEKEEDKE EIKIDEEPSL NAIEKAETEN VKIVIEEPEI VNNEETSVHE SESLKENAEP VEAVKNSDGT EQISREVTVD RAKEEDIAPK 0601: TEEIQERPSE SKASLEPKEE VDHISNETEE HEHVLERDVQ QCETIESEAV ETKEDTQPSL DLKEDKETEE AETFKTVFSS DEVRSSAVQE EQFGEHTEPC 0701: SSEIKDESHG KEESVEVKSQ ETVQDENTED KHDVLKVPST ESEKYQGNEP ETVLVSNTGS YEKSEKSPSD LVLNVDKEEL NDEKINVDQV DGTQIMEEPI 0801: GLDSNGAEAE QIDQNITNET EEILVAKPVS LLDVKSVEQM QKPKLESPSE VSEETSKTVD EKIEEKPEEE VTLYQEGQVD GSYGLETKEE TVSVPESIEL 0901: EEQPQEERSV IDPTPLQKPT LESPSEVLEE SSKTVDEKIE EKTDSIELGE IAQEERSVTD LTPLQEESSQ PNEQEKETKL EKHEPTNEEV KSDEVIEVLS 1001: ASPSKELEGE TVVEAENIEN IKENEEEQAA EKIQKSLETV QTVESPSSLL FSSEEQDHVT VAEEIVDEKA KEEVPMLQIK NEDDATKIHE TRVEQARDIG 1101: PSLTEICSIN QNQPEEQVKE ACSKEEQEKE ISTNSENIVN ETYALHSVEA AEEETATNGE SLDDVETTKS VLLEVRKEEE EAEMKTDAEP RLDAIEKEEL 1201: ETVKTVVQDA KIVNNEETTA HESESLKGDN HQEKNAEPVE ATQNLDDAEQ ISREVTVDTE READITEKIE KVQEGPTVIE TPTIQGEDIE SETSLELKEE 1301: VDQSSKDTEE HEHVLERDIP QCETLKAEAV DTSTVEEAAI LKTLETNISE PEAMHSETSL DLKVDKEQKE AETVKTVIFS NEVGTSDAQA EEFGEHTEPC 1401: SSEIKDESQG SEESVEVKSK ETVQGESSEE KDVNMLDVQS GESEKYQENE PDISLVSKTE NGDKFEEIPS VVEGAGLDET THNQTLLDVE SVVKQSLDTP 1501: SEEETSKTID EKIEDKPKEE VTLHQEGREE GSYGLDTKDE AVSVLESREL GEQPQQEELC LANEQENETK LQEEQVDKHE PTKEEVSNDQ QSPVEEISNE 1601: VIQVSSASLS EGPEYETVVE AEKIGEEQVA DKIQKSFETG EIVEAHSSLP SSSEEKEHET VSEKTDDEKV KDAEPIGDMR ERGLDIAETT HLSLPSVDQK 1701: EDVDEIHIPS VALPLDEQEK VTSTEKGETK SSEAEDDKPD EHVDSSTSPM LSEKNDNETQ TSKTSEDVCM QQEESGTLEV PKPEESKEDK SQEISETIEE 1801: IEATSDQTLP IETSHTDNTL SSELVSEQDD QSPKKVEEIH EEEPKEAHDV EATSERNLPV ETSDADNTLS SQLVSETKEE HKLQAGEILP TEIIPRESSD 1901: EALVSMLASR EDDKVALQED NCADDVRETN DIQEERSISV ETEESVGETK PKEHEDEIRD AHVETPTAPI ILEENDSETL IAEAKKGNEE INETERTVAL 2001: DHEEEFVNHE APKLEETKDE KSQEIPETAK ATETTIDQTL PIGTSQADQT PSLVSDKDDQ TPKQVEEILE EETKETHKVQ AEDIFSTETV PKESFIEAPV 2101: SMLASGEDEP VTPQEGDYAA NTQEERHVSA ETEEKVGETK PKESQAEGAE KSDDQVEDES TKKTDVEVAG LENDYPTEEA EHGDETYSTL PVVGILTQLQ 2201: TTLETERAIN DSASSEVSMI KEPADQEEKK GDDVVESNEK DFVSDILEAK RLHGDKSGEA EKIKEESGLA GKSLPIEEIN LQEEHKEEVK VQEETREIAQ 2301: VLPREEILIS SSPLSAEEQE HVISDEKQEE REPQQDFNGS TSEKISLQVE HLKDFETSKK EQKDETHETV KEEDQIVDIK DKKKDDEEQE IVSSEVKKDN 2401: KDARELEVGN DFVSRDGEKE EVPHNALENE EEMNEVVASE KQISDPVGVI KKASEAEHED PVDDIKSNDD RDFPTEQAPK DQSDEVSADE TVPKEAIGEE 2501: LKVPSSKVLD DIQENSNTEA VTNFADRDLP VQNLSELIQS HQSPNQVEET SFEFNKAQED KKEETVDALI TNVQVQDQPK EDFEAAAIEK EISEQEHKLN 2601: DLTDVQEDIG TYVKVQVPDD EIKGDGHDSV AAQKEETSSI EEKREVEHVK AEMEDAIKHE VSVEEKNNTS ENIDHEAAKE IEQEEGKQTN IVKEEIREEE 2701: KEINQESFNN VKETDDAIDK TQPEIRDIES LSSVSKTQDK PEPEYEVPNQ QKREITNEVP SLENSKIEEE LQKKDEESEN TKDLFSVVKE TEPTLKEPAR 2801: KSLSDHIQKE PKTEEDENDD EDHEHKDDKT SPDSIVMVEA KDTVSIVKTH KKSHGILSGV GSKVKHSISK VKKVLTGKSS HTTKPSSPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)