AT5G40410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 34649 Blast hits to 13101 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 34; Plants - 34234; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16171385..16173211 | ||||||||||||||||
| Molecular Weight (calculated) | 68673.50 Da | ||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKANVYSCS KFRFLYRRRF LSQSSFVHSL DANVSSLIAA VKSCVSIELC RLLHCKVVKS VSYRHGFIGD QLVGCYLRLG HDVCAEKLFD EMPERDLVSW 101: NSLISGYSGR GYLGKCFEVL SRMMISEVGF RPNEVTFLSM ISACVYGGSK EEGRCIHGLV MKFGVLEEVK VVNAFINWYG KTGDLTSSCK LFEDLSIKNL 201: VSWNTMIVIH LQNGLAEKGL AYFNMSRRVG HEPDQATFLA VLRSCEDMGV VRLAQGIHGL IMFGGFSGNK CITTALLDLY SKLGRLEDSS TVFHEITSPD 301: SMAWTAMLAA YATHGFGRDA IKHFELMVHY GISPDHVTFT HLLNACSHSG LVEEGKHYFE TMSKRYRIDP RLDHYSCMVD LLGRSGLLQD AYGLIKEMPM 401: EPSSGVWGAL LGACRVYKDT QLGTKAAERL FELEPRDGRN YVMLSNIYSA SGLWKDASRI RNLMKQKGLV RASGCSYIEH GNKIHKFVVG DWSHPESEKI 501: QKKLKEIRKK MKSEMGYKSK TEFVLHDVGE DVKEEMINQH SEKIAMAFGL LVVSPMEPII IRKNLRICGD CHETAKAISL IEKRRIIIRD SKRFHHFLDG 601: SCSCSDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)