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AT5G40380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.702
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Curator
Summary (TAIR10)
Encodes a cysteine-rich receptor-like protein kinase.
Computational
Description (TAIR10)
cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (CRK42); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (TAIR:AT1G70530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G40380-MONOMERBioGrid:19287EC:2.7.11.-eggNOG:COG0515eggNOG:ENOG410IHAJEMBL:AB006702EMBL:BX829950
EMBL:CP002688EnsemblPlants:AT5G40380EnsemblPlants:AT5G40380.1entrez:834036Gene3D:2.60.120.200GeneID:834036Genevisible:Q9FNE1
GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT5G40380.1hmmpanther:PTHR27002hmmpanther:PTHR27002:SF128HOGENOM:HOG000116550
InParanoid:Q9FNE1InterPro:IPR000719InterPro:IPR002902InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441
KEGG:ath:AT5G40380OMA:RCFGADKPaxDb:Q9FNE1Pfam:PF00069Pfam:PF01657Pfam:PF07714Pfam:Q9FNE1
Pfscan:PS50011Pfscan:PS51473PhylomeDB:Q9FNE1PRIDE:Q9FNE1PRO:PR:Q9FNE1PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011PROSITE:PS51473ProteinModelPortal:Q9FNE1Proteomes:UP000006548RefSeq:NP_198854.3scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:Q9FNE1STRING:3702.AT5G40380.1SUPFAM:SSF56112TAIR:AT5G40380tair10-symbols:CRK42TMHMM:TMhelix
UniGene:At.30287UniGene:At.69175UniGene:At.69450UniProt:Q9FNE1
Coordinates (TAIR10) chr5:+:16152121..16155038
Molecular Weight (calculated) 72710.00 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.14
Length 651 amino acids
Sequence (TAIR10)
(BLAST)
001: MRCLTKTRSF HYVIIFYSFF FLPFLSSSSD DQRTTVSGLF CGGRSKSSAD PNYIPTFVED MHSLSLKLTT RRFATESLNS TTSIYALIQC HDDLSPSDCQ
101: LCYAIARTRI PRCLPSSSAR IFLDGCFLRY ETYEFYDESV SDASDSFSCS NDTVLDPRFG FQVSETAARV AVRKGGFGVA GENGVHALAQ CWESLGKEDC
201: RVCLEKAVKE VKRCVSRREG RAMNTGCYLR YSDHKFYNGD GHHKFHVLFN KGVIVAIVLT TSAFVMLILL ATYVIMTKVS KTKQEKRNLG LVSRKFNNSK
301: TKFKYETLEK ATDYFSHKKM LGQGGNGTVF LGILPNGKNV AVKRLVFNTR DWVEEFFNEV NLISGIQHKN LVKLLGCSIE GPESLLVYEY VPNKSLDQFL
401: FDESQSKVLN WSQRLNIILG TAEGLAYLHG GSPVRIIHRD IKTSNVLLDD QLNPKIADFG LARCFGLDKT HLSTGIAGTL GYMAPEYVVR GQLTEKADVY
501: SFGVLVLEIA CGTRINAFVP ETGHLLQRVW NLYTLNRLVE ALDPCLKDEF LQVQGSEAEA CKVLRVGLLC TQASPSLRPS MEEVIRMLTE RDYPIPSPTS
601: PPFLRVSSLT TDLEGSSTIS HSTNSTTTFN TMVKTDQASY TSSESSTTRT I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)