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AT5G40360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 115
Curator
Summary (TAIR10)
putative transcription factor (MYB115)
Computational
Description (TAIR10)
myb domain protein 115 (MYB115); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 118 (TAIR:AT3G27785.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:CP002688EMBL:DQ447019
EnsemblPlants:AT5G40360EnsemblPlants:AT5G40360.1entrez:834034Gene3D:1.10.10.60
GeneID:834034GO:GO:0003700GO:GO:0006355GO:GO:0010439
GO:GO:0043565Gramene:AT5G40360.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF518
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G40360
KO:K09422OMA:IGCHEPVPfam:PF13921Pfscan:PS51294
PhylomeDB:Q1PDP9PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_568581.1
SMART:SM00717SMR:Q1PDP9STRING:3702.AT5G40360.1SUPFAM:SSF46689
TAIR:AT5G40360tair10-symbols:AtMYB115tair10-symbols:MYB115UniGene:At.8438
UniProt:Q1PDP9
Coordinates (TAIR10) chr5:+:16145220..16146579
Molecular Weight (calculated) 41601.90 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.73
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MYHQNLISST PNQNSNPHDW DIQNPLFSIH PSAEIPSKYP FMGITSCPNT NVFEEFQYKI TNDQNFPTTY NTPFPVISEG ISYNMHDVQE NTMCGYTAHN
101: QGLIIGCHEP VLVHAVVESQ QFNVPQSEDI NLVSQSERVT EDKVMFKTDH KKKDIIGKGQ WTPTEDELLV RMVKSKGTKN WTSIAKMFQG RVGKQCRERW
201: HNHLRPNIKK NDWSEEEDQI LIEVHKIVGN KWTEIAKRLP GRSENIVKNH WNATKRRLHS VRTKRSDAFS PRNNALENYI RSITINNNAL MNREVDSITA
301: NSEIDSTRCE NIVDEVMNLN LHATTSVYVP EQAVLTWGYD FTKCYEPMDD TWMLMNGWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)