suba logo
AT5G40340.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G27860.1); Has 216308 Blast hits to 97367 proteins in 3295 species: Archae - 846; Bacteria - 24234; Metazoa - 92634; Fungi - 23658; Plants - 11662; Viruses - 1573; Other Eukaryotes - 61701 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXQIeggNOG:ENOG4111IWHEMBL:AB006702EMBL:CP002688EnsemblPlants:AT5G40340EnsemblPlants:AT5G40340.1entrez:834032
GeneID:834032GO:GO:0005730GO:GO:0009506Gramene:AT5G40340.1hmmpanther:PTHR10688hmmpanther:PTHR10688:SF1IntAct:Q9FNE4
InterPro:IPR000313KEGG:ath:AT5G40340ncoils:CoilOMA:LMGENAKPfam:PF00855Pfscan:PS50812PhylomeDB:Q9FNE4
PROSITE:PS50812Proteomes:UP000006548RefSeq:NP_198850.1SMART:SM00293SMR:Q9FNE4STRING:3702.AT5G40340.1SUPFAM:SSF63748
TAIR:AT5G40340UniGene:At.30288UniGene:At.30902UniProt:Q9FNE4
Coordinates (TAIR10) chr5:-:16131654..16134680
Molecular Weight (calculated) 114245.00 Da
IEP (calculated) 4.72
GRAVY (calculated) -1.18
Length 1008 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEIEVVLGIG EDAGPKPCSA EIESAEKTLK DDGVVQENGV RVSDNGEKKS DVVVDVDEKN EKNLNESGVI EDCVMNGVSS LLKLKEDVEE EEEEEEEEEE
0101: EEEDGEDEEE EEEEEEEEEE EEHGYCVGDF VWGKIKNHPW WPGQIYDPSD ASDLALKIKQ KGKLLVACFG DGTFAWCGAS QLKPFAESFK ECSKVSNSRS
0201: FLGAVEEAVE EIGRHIERVL VCDCAEEKKH EFDSPLVNNA GIKEGVLVRD VRREMISSLL IGKHGEILKD VKSFAETVSF SGLLELEILK RKVSAFYRSN
0301: RGYGLTEYHE PQSVPGLEDK NNDDDDDDEE KNVNDGLQWR AKRSRVEEVA ALDHEESSSL QRSLEKCSGF PDHRLPHRRK EKSITEIIEK ESAAKVRFET
0401: EPADGDVKSN VKSGRKKTKR HDEVNGDLEN VTTTALWRRR KSEVATIEDG GNKQVVESSK GKTSRKKKKM DVDDGDDDGS GDKEESEEKE ISDLEINIDS
0501: TSLASLRKKV RFDDSVVERS TENGETATQT SKRERKKSKY LSPDFLSDFS RKGRKKSTIE SESSKVSSQS QVDERVTDAS DSLMEVEEDT LDKPCEPSSD
0601: NGLGQEELSR ELSNAVDFLR LGATPKEMQD LIRVAALGTQ YPKDSSSRDM VREFMTIYRS FTYHDGANHK FLGSYDSSDK EKEELSEMGK PVTKGKEKKD
0701: KKGKAKQKAE EIEVTGKEEN ETDKHGKMKK ERKRKKSESK KEGGEGEETQ KEANESTKKE RKRKKSESKK QSDGEEETQK EPSESTKKER KRKNPESKKK
0801: AEAVEEEETR KESVESTKKE RKRKKPKHDE EEVPNETEKP EKKKKKKREG KSKKKETETE FSGAELYVTF GPGSSLPKKE DLIEIYEKFG ALDKERTDTV
0901: DNNFSAHVAF LDVADGEKAF ESSLEKCPFT SNSTVKFRLK YPNERTEEKK TEAEVAETTM EVEYLKKKLD EMKLLLDGCE GGMTEEVKVK LEGEMVNLLE
1001: KVIEMRSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)