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AT5G40280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Prenyltransferase family protein
Curator
Summary (TAIR10)
encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.
Computational
Description (TAIR10)
ENHANCED RESPONSE TO ABA 1 (ERA1); CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 2257 Blast hits to 1610 proteins in 263 species: Archae - 4; Bacteria - 30; Metazoa - 707; Fungi - 630; Plants - 303; Viruses - 4; Other Eukaryotes - 579 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G40280-MONOMERBioCyc:MetaCyc:AT5G40280-MONOMERBioGrid:19277EC:2.5.1.58eggNOG:COG5029eggNOG:KOG0365EMBL:AB010699
EMBL:AF214106EMBL:BT030457EMBL:CP002688EMBL:U44849EMBL:U46574EnsemblPlants:AT5G40280EnsemblPlants:AT5G40280.1
entrez:834026Gene3D:1.50.10.20GeneID:834026Genevisible:Q38920GO:GO:0004311GO:GO:0004660GO:GO:0005965
GO:GO:0008270GO:GO:0009414GO:GO:0009737GO:GO:0009788GO:GO:0009934GO:GO:0018342GO:GO:0018343
GO:GO:0042127Gramene:AT5G40280.1gramene_pathway:2.5.1.29gramene_pathway:PWY-5120gramene_pathway:PWY-5805-ARAgramene_plant_reactome:1119545gramene_plant_reactome:6875908
hmmpanther:PTHR11774hmmpanther:PTHR11774:SF6HOGENOM:HOG000190594InParanoid:Q38920IntAct:Q38920InterPro:IPR001330InterPro:IPR008930
InterPro:IPR026872KEGG:ath:AT5G40280KO:K05954OMA:RPWIFYWPANTHER:PTHR11774:SF6PaxDb:Q38920Pfam:PF00432
Pfam:Q38920PRIDE:Q38920PRO:PR:Q38920ProteinModelPortal:Q38920Proteomes:UP000006548RefSeq:NP_198844.1SMR:Q38920
STRING:3702.AT5G40280.1SUPFAM:SSF48239TAIR:AT5G40280tair10-symbols:ATFTBtair10-symbols:ERA1tair10-symbols:WIGUniGene:At.9205
UniProt:Q38920
Coordinates (TAIR10) chr5:+:16101391..16104783
Molecular Weight (calculated) 54218.90 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.42
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVVTRLIRL KCVGLRLDRS GLNRRICHGG HGESTRRRVM EELSSLTVSQ REQFLVENDV FGIYNYFDAS DVSTQKYMME IQRDKQLDYL MKGLRQLGPQ
101: FSSLDANRPW LCYWILHSIA LLGETVDDEL ESNAIDFLGR CQGSEGGYGG GPGQLPHLAT TYAAVNALVT LGGDKALSSI NREKMSCFLR RMKDTSGGFR
201: MHDMGEMDVR ACYTAISVAS ILNIMDDELT QGLGDYILSC QTYEGGIGGE PGSEAHGGYT YCGLAAMILI NEVDRLNLDS LMNWAVHRQG VEMGFQGRTN
301: KLVDGCYTFW QAAPCVLLQR LYSTNDHDVH GSSHISEGTN EEHHAHDEDD LEDSDDDDDS DEDNDEDSVN GHRIHHTSTY INRRMQLVFD SLGLQRYVLL
401: CSKIPDGGFR DKPRKPRDFY HTCYCLSGLS VAQHAWLKDE DTPPLTRDIM GGYSNLLEPV QLLHNIVMDQ YNEAIEFFFK AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)