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AT5G40220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 43
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 43 (AGL43); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 75 (TAIR:AT5G41200.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB010699EMBL:AY141223EMBL:CP002688EnsemblPlants:AT5G40220EnsemblPlants:AT5G40220.1
entrez:834020GeneID:834020GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G40220.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF240HOGENOM:HOG000064579IntAct:Q9FL10InterPro:IPR002100KEGG:ath:AT5G40220ncoils:Coil
OMA:DHYHEEDPfam:PF00319Pfscan:PS50066PhylomeDB:Q9FL10PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_198838.2
SMART:SM00432STRING:3702.AT5G40220.1SUPFAM:SSF55455TAIR:AT5G40220tair10-symbols:AGL43UniGene:At.64265UniProt:Q9FL10
Coordinates (TAIR10) chr5:-:16078390..16079364
Molecular Weight (calculated) 37009.50 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.70
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMRSSLPSS SSAYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPPE REKVRDIALR YSQLNEALRR KKSVNLHGFL NKKKKNKGLK
101: NTDKKRKTSL KKVNVLKYPL ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS QFSLFMYNHG DNTLSQIPVS
201: ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE
301: SVNNPWLNQL MQNELYGYGY ADFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)