suba logo
AT5G40190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.656
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA ligase/cyclic nucleotide phosphodiesterase family protein
Curator
Summary (TAIR10)
Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.
Computational
Description (TAIR10)
RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT3G28140.1); Has 227 Blast hits to 227 proteins in 109 species: Archae - 0; Bacteria - 185; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:834017eggNOG:ENOG410IKKFeggNOG:ENOG41122Y4EMBL:AB010699EMBL:AK175111EMBL:AK175490EMBL:BT010402
EMBL:BT010637EMBL:CP002688EnsemblPlants:AT5G40190EnsemblPlants:AT5G40190.1entrez:834017Gene3D:3.90.1140.10GeneID:834017
Gramene:AT5G40190.1hmmpanther:PTHR36039hmmpanther:PTHR36039:SF2IntAct:Q9FL13InterPro:IPR009097KEGG:ath:AT5G40190OMA:EVPKTRM
Pfam:PF13563PhylomeDB:Q9FL13Proteomes:UP000006548RefSeq:NP_198835.1STRING:3702.AT5G40190.1SUPFAM:SSF55144TAIR:AT5G40190
UniGene:At.43536UniProt:Q9FL13
Coordinates (TAIR10) chr5:-:16069298..16069849
Molecular Weight (calculated) 20617.70 Da
IEP (calculated) 4.57
GRAVY (calculated) 0.02
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEGYAIELY FDPALENQVL KAWNVFARRQ ISTKLINTES RPHITLFSTS FFDSTRLESV IKNFVSKQEP ISISFSTIGS FSSDNNVLFL SPTPSLSLLQ
101: LQTQLCDMLK KESVDIGEEY RVDSWVPFCP VALDVPKSRM AEAFSVLRDL KLPVNGYGME IGLVEFSPVR EVFSFPLGNT LES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)