AT5G40170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 54 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 54 (RLP54); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 27 (TAIR:AT2G33060.1); Has 95502 Blast hits to 27133 proteins in 1050 species: Archae - 52; Bacteria - 4975; Metazoa - 18576; Fungi - 1120; Plants - 63605; Viruses - 17; Other Eukaryotes - 7157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16065179..16067557 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88802.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 792 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSNLAVFFI TCFFCCVFVT SDSVYTLPFP FPRDQVEILL ELKNEFPSFN CDLTWKLDYF GRMDTRANIS SWTKDSDSFS GVSFDSETGV VKELSLGRQC 101: LTSLKANSSL FRFQHLRYLD LSENHFDSSP IPSGFGRLTY LESLDLSKNG FIGEVPSSIS NLSRLTNLDL SYNKLTGGIP NLHSLTLLEN IDLSYNKFSG 201: AIPSYLFTMP FLVSLNLRQN HLSDPLENIN YSATSKLLIL DMAYNLMSHR ILEPISKLAN LIQIDLSFQK TPYTFNFDFL LFKSLVRLDL SGNSVSVVGT 301: GSENLTHLDL SSCNITEFPM FIKDLQRLWW LDISNNRIKG KVPELLWTLP SMLHVNLSRN SFDSLEGTPK IILNSSISEL DLSSNAFKGS FPIIPPYVNI 401: MAASNNYFTG GIPLIFCKRY RLSLLDLSNN NFSGTIPRCL TNVSLGLEAL KLSNNSLTGR LPDIEDRLVL LDVGHNQISG KLPRSLVNCT TLKFLNVEGN 501: HINDTFPFWL KALTRLEIIV LRSNRFHGPI SSPEVSLSFT ALRIIDISRN SFNGSLPQNY FANWSAPLVN TPQGYRWPEY TGDEHSKYET PLWSYPSIHL 601: RIKGRSIELG KIPDTYTSID FSGNSFEGQI PESIGDLKSL IVLDLSNNSF TGRIPSSLAK LKQLESLDLS QNRISGNIPQ ELRELTFLGY VNMSHNRLTG 701: QIPQSTQVGG QPKSSFEGNI NLCGLPLQES CLRGNGVPST PHTQEQELPK QEHALNWKAA AIGYGPGVLF GLAIGQAFAR YKPVLFYKLF RL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)