AT5G40100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.888 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 24326 Blast hits to 16698 proteins in 825 species: Archae - 27; Bacteria - 1798; Metazoa - 3353; Fungi - 279; Plants - 18146; Viruses - 2; Other Eukaryotes - 721 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16043976..16047355 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115282.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1017 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSASRAS SYDVFLSFRG EDTRHSIVSH LYEALTSRGI ATFKDDKRLE LGDHISEELQ RAIEGSDFVV VVLSENYPTS RWCLMELQSI MELQMEGRLG 0101: VFPVFYRVEP SAVRYQLGSF DLEGYQRDPQ MADMVPKWRQ ALKLIADLSG VASGQCIDEA TMVRKIVEDI SKRKTLKHKI DFRNFVGVDT HLQGLKSLLD 0201: MDSNNDEVRM IGIWGMGGIG KTTIAKCLYD QLSSQFTASY FTQDIKGIHK ELDLLHLQNR LLYNTLGDDI MPWSVEAGRE VIAARLGNHK VLLVLDGVDK 0301: LVQIHALAKE TRWFGRQSRI IITTRDKGLL NSCGVKTIYD VKCLDDKDSL QMFKQIAFEG GSPPSVDFEQ LSIRAARLAH GLPSALQAYA LFLRGRANSP 0401: EEWEEAVCGL ESTPDENIME ILKISYEGLA KAHQNAFLHV ACLFNGDTFR RVTSLLDVSR MESNLWMRVL AEKSLINITS NGYVTLHKLV EQMGREIMLA 0501: SGKFIGDPET IHDTLGMGQT ESISLHICEM TCAFSMATGV FSRMYKLRFL KVYKHVNERE SMLQVIPEDE YPSINCLLLH WDAFPLSKFP LRFNTYCLVE 0601: LNLRHSNLET LWSGVLKFGH LRKLDVTGSK NLKQLPDLSC AEELDELLLE QCKRLKGIPE SIAERSTLGR LNLSYYGGAK NPMGVVIQKV SQTQRITLLF 0701: PTSSVEMQLM NISITGDIRF RVFADFEGYA EYFSFSTEQK IHATRTVSVH QAPRLISELN KSTTLNIRRF SYKENGRPVT LHSFPDIPGL KQLELVNLNI 0801: QKLSDGIGHF EFLENLDLSG NDFENLPEDM NRLSRLKTLC LRNCSKLKEL PELTQVQSLT LSNCKNLRSL VKISDASQDP SLYSLLELCL DNCKNVKSLS 0901: DQLSHFPKLA YLDLSSHDFK KLPSSIRDLT SLVTLCLNNC KKLKSLEELP LSLQFLDAKG CDSLEADDLE HFKGRVNREV SAQPHSARFQ ETEMPSYEQD 1001: HQARKSRLPK FLCCSYF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)