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AT5G40050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/FBD-like domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G25860.1); Has 1563 Blast hits to 1537 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1563; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB022222EMBL:CP002688EnsemblPlants:AT5G40050EnsemblPlants:AT5G40050.1
entrez:834002Gene3D:3.80.10.10GeneID:834002Genevisible:Q9LUK1
Gramene:AT5G40050.1hmmpanther:PTHR32141hmmpanther:PTHR32141:SF18HOGENOM:HOG000015201
InParanoid:Q9LUK1InterPro:IPR001810InterPro:IPR006566InterPro:IPR032675
KEGG:ath:AT5G40050ncoils:CoilOMA:RNRENINPaxDb:Q9LUK1
Pfam:PF00646Pfam:Q9LUK1Pfscan:PS50181PhylomeDB:Q9LUK1
PRIDE:Q9LUK1PRO:PR:Q9LUK1PROSITE:PS50181ProteinModelPortal:Q9LUK1
Proteomes:UP000006548RefSeq:NP_198821.1SMART:SM00256SMART:SM00579
STRING:3702.AT5G40050.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G40050
UniGene:At.55269UniProt:Q9LUK1
Coordinates (TAIR10) chr5:-:16032083..16033551
Molecular Weight (calculated) 47925.40 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.25
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: METKRVLSSS GSIDSISPLP DELLSHILSF LPTKRAASTS ILSKRWRTLF PLMNHLCASL YLDDTDLLYP ERQTEEEYYV IHNSFRNFVD KTLSGCNNNS
101: LKKFSLTYED DDVQRMCLTT GMMSKALEQG VSDLELYIYM PLMYEPPRLL PDTVFINNTL VKLTLGTELC LGRSPWENLE ELYIHHIYIE DRDEEFNIHT
201: APHYIAHNIK KLTVCYNNDV QAPRILSIYT PNLVYLDYSD YLTCLYNSEN HFNDLLEARL DLAFARAGRW GDEHDTCLKI MNSITNVQIL HLSCFTVENL
301: ATLHFEGSEK EYWQLLCNMI EKSPKLETLV LEGLYGISDC EVGIDGGNMV KVVEIQEYKG RLEELNQVKC FLREMENLEE VKVNTSDEIE NKLQLTNDLL
401: ALLPKRSSKC NIHVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)