AT5G40030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, embryo, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 111692 Blast hits to 81240 proteins in 2732 species: Archae - 30; Bacteria - 14475; Metazoa - 44429; Fungi - 12685; Plants - 18495; Viruses - 325; Other Eukaryotes - 21253 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16026227..16028283 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55498.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKQTPNLES LQDCSSSNYN NANASPVSGS ASFKTSSNGS EDVRLNNSIS LSFCSSNSVS SEANLEKTQS FDANEANFKR VFAPSKPHKG NDLRWDAIQN 101: VKCSKNEDLG LGHFRLLKKL GCGDIGSVYL AELREMGCFF AMKVMDKGML IGRKKLVRAQ TEREILGLLD HPFLPTLYSH FETEKFSCLL MEFCSGGDLH 201: ILRQKQPGKH FSELAARFYA SEVLLALEYL HMMGVVYRDL KPENVMVRED GHIMLSDFDL SLQSFVSPTL IQSTSQPSCH IASYCIQPPC IDPSCKLPVA 301: CIQPSCFKPR FLNNKPRKAK TEKAGSDSLP MLIAEPTAAR SMSFVGTHEY LAPEIIRGDG HGSSVDWWTF GIFLYELLTG KTPFKGNGNR ETLFNVVGQP 401: LKFPEGSISF AAKDLIRGLL TKDPKKRLGF KKGATEIKQH PFFNNVNWAL IRSTTPPEIP KPIDLSILNE TLKSSVQQQG KHSKQSDSSS GPYLDFEFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)