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AT5G39810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 98
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 98 (AGL98); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 81 (TAIR:AT5G39750.1); Has 502 Blast hits to 498 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 430; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB016876EMBL:CP002688EnsemblPlants:AT5G39810EnsemblPlants:AT5G39810.1entrez:833977
GeneID:833977GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G39810.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF240HOGENOM:HOG000064579IntAct:Q9FIW6InterPro:IPR002100KEGG:ath:AT5G39810ncoils:CoilPfam:PF00319
Pfscan:PS50066PhylomeDB:Q9FIW6PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_198797.1SMART:SM00432SMR:Q9FIW6
STRING:3702.AT5G39810.1SUPFAM:SSF55455TAIR:AT5G39810tair10-symbols:AGL98UniGene:At.55261UniProt:Q9FIW6
Coordinates (TAIR10) chr5:-:15937278..15938344
Molecular Weight (calculated) 37290.60 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.64
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRSLPSSS GCSNSSSSSS YSLASTSLSN RLETIFRKAS ELCTLCDIEA CVIYYGPDGE LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK
101: KNKTNLEKKA KIKDNDLKRL SLEPHVSKVR ERIRFVESQK HKETKPDHQS LASSSLNNQT QSLNPSQFSL FMYNHGDNIL SQIPVSASNF NQDYFSALLE
201: QSELKSQIMK QEVCGYEQNM CMSNNGDATL SQIPLSASNF NQEFSALLQE ESGLMQQELC NYDQNMFMNN NNFQHSFVSN TQDHSAPAVQ ESVNNNYGLM
301: PHVPCGYDQN LFTSDITNNN LLIDNSMFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)