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AT5G39790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 5'-AMP-activated protein kinase-related
Curator
Summary (TAIR10)
Encodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.
Computational
Description (TAIR10)
5'-AMP-activated protein kinase-related; BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DIP:DIP-61406NDNASU:833975eggNOG:ENOG410XRB3eggNOG:KOG1616
EMBL:AB016876EMBL:AY045645EMBL:AY059655EMBL:CP002688
EnsemblPlants:AT5G39790EnsemblPlants:AT5G39790.1entrez:833975GeneID:833975
GO:GO:0009569GO:GO:0009570GO:GO:0010581GO:GO:2001070
Gramene:AT5G39790.1hmmpanther:PTHR10343hmmpanther:PTHR10343:SF61HOGENOM:HOG000029881
IntAct:Q94AX2InterPro:IPR014756InterPro:IPR032640KEGG:ath:AT5G39790
ncoils:CoilPaxDb:Q94AX2Pfam:PF16561PhylomeDB:Q94AX2
PRIDE:F4KFV1PRO:PR:Q94AX2ProteinModelPortal:Q94AX2Proteomes:UP000006548
RefSeq:NP_568573.2STRING:3702.AT5G39790.1SUPFAM:SSF81296TAIR:AT5G39790
UniGene:At.26168UniProt:F4KFV1
Coordinates (TAIR10) chr5:-:15932884..15935121
Molecular Weight (calculated) 31055.50 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.31
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQEH EITNIKTELA LMELEVQALV KLAEEIANLG IPQGSRKISG KYIQSHLLSR LDAVQKKMKE QIKGVEAAQS KEVHVFWIGM
201: AESVQVMGSF DGWSQREDLS PEYSALFTKF STTLFLRPGR YEMKFLVDGE WQISPEFPTS GEGLMENNVL VVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)