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AT5G39740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L5 B
Curator
Summary (TAIR10)
Encodes a ribosomal protein RPL5B that is involved in ribosome biogenesis and plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development.
Computational
Description (TAIR10)
ribosomal protein L5 B (RPL5B); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: cell proliferation, translation, ribosome biogenesis, leaf morphogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 (TAIR:AT3G25520.1); Has 1454 Blast hits to 1453 proteins in 545 species: Archae - 345; Bacteria - 5; Metazoa - 622; Fungi - 159; Plants - 121; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Protein Annotations
BioGrid:19221eggNOG:COG0256eggNOG:KOG0875EMBL:AB016876
EMBL:AY079020EMBL:AY093123EMBL:BT008706EMBL:CP002688
EMBL:Z17696EMBL:Z17697EnsemblPlants:AT5G39740EnsemblPlants:AT5G39740.1
EnsemblPlants:AT5G39740.2entrez:833970GeneID:833970Genevisible:P49227
GO:GO:0000027GO:GO:0003735GO:GO:0005730GO:GO:0005773
GO:GO:0005829GO:GO:0005886GO:GO:0006412GO:GO:0008097
GO:GO:0008283GO:GO:0009965GO:GO:0022625GO:GO:0022626
Gramene:AT5G39740.1Gramene:AT5G39740.2HAMAP:MF_01337_Ahmmpanther:PTHR23410
HOGENOM:HOG000105947InParanoid:P49227InterPro:IPR005485InterPro:IPR025607
KEGG:ath:AT5G39740KO:K02932OMA:VICQVVYPANTHER:PTHR23410
PaxDb:P49227Pfam:P49227Pfam:PF00861Pfam:PF14204
Pfam:PF17144PhylomeDB:P49227PRIDE:P49227PRINTS:PR00058
PRO:PR:P49227ProteinModelPortal:P49227Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_001190439.1RefSeq:NP_198790.1SMR:P49227
STRING:3702.AT5G39740.1SUPFAM:SSF53137TAIR:AT5G39740tair10-symbols:OLI7
tair10-symbols:RPL5BUniGene:At.23949UniGene:At.25396UniProt:P49227
Coordinates (TAIR10) chr5:+:15903365..15905185
Molecular Weight (calculated) 34438.80 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.78
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFVKSSKSN AYFKRYQVKF RRRRDGKTDY RARIRLINQD KNKYNTPKYR FVVRFTNKDI VAQIVSASIA GDIVKASAYA HELPQYGLTV GLTNYAAAYC
101: TGLLLARRVL KMLEMDDEYE GNVEATGEDF SVEPTDSRRP FRALLDVGLI RTTTGNRVFG ALKGALDGGL DIPHSDKRFA GFHKENKQLD AEIHRNYIYG
201: GHVSNYMKLL GEDEPEKLQT HFSAYIKKGV EAESIEEMYK KVHAAIRAEP NHKKTEKSAP KEHKRYNLKK LTYEERKNKL IERVKALNGA GGDDDDEDDE
301: E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)