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AT5G39680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g39680-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g39680-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2744 (EMB2744); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 37711 Blast hits to 13427 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 23; Plants - 37282; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB012243EMBL:BX832481EMBL:CP002688EnsemblPlants:AT5G39680EnsemblPlants:AT5G39680.1
entrez:833964Gene3D:1.25.40.10GeneID:833964Genevisible:Q9FK93GO:GO:0008270Gramene:AT5G39680.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF382HOGENOM:HOG000237570InParanoid:Q9FK93InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867iPTMnet:Q9FK93
KEGG:ath:AT5G39680OMA:FQNGCFEPaxDb:Q9FK93Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9FK93
Pfscan:PS51375PhylomeDB:Q9FK93PRIDE:Q9FK93PRO:PR:Q9FK93PROSITE:PS51375ProteinModelPortal:Q9FK93Proteomes:UP000006548
RefSeq:NP_198784.1SMR:Q9FK93STRING:3702.AT5G39680.1TAIR:AT5G39680tair10-symbols:EMB2744TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.19755UniGene:At.68250UniGene:At.70298UniProt:Q9FK93
Coordinates (TAIR10) chr5:-:15884236..15886368
Molecular Weight (calculated) 80848.50 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.16
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MSALSVIEQR LLKWDKLASL VPKSKKTPFP IDRLNELLKV CANSSYLRIG ESIHAHLIVT NQSSRAEDAY QINSLINLYV KCRETVRARK LFDLMPERNV
101: VSWCAMMKGY QNSGFDFEVL KLFKSMFFSG ESRPNEFVAT VVFKSCSNSG RIEEGKQFHG CFLKYGLISH EFVRNTLVYM YSLCSGNGEA IRVLDDLPYC
201: DLSVFSSALS GYLECGAFKE GLDVLRKTAN EDFVWNNLTY LSSLRLFSNL RDLNLALQVH SRMVRFGFNA EVEACGALIN MYGKCGKVLY AQRVFDDTHA
301: QNIFLNTTIM DAYFQDKSFE EALNLFSKMD TKEVPPNEYT FAILLNSIAE LSLLKQGDLL HGLVLKSGYR NHVMVGNALV NMYAKSGSIE DARKAFSGMT
401: FRDIVTWNTM ISGCSHHGLG REALEAFDRM IFTGEIPNRI TFIGVLQACS HIGFVEQGLH YFNQLMKKFD VQPDIQHYTC IVGLLSKAGM FKDAEDFMRT
501: APIEWDVVAW RTLLNACYVR RNYRLGKKVA EYAIEKYPND SGVYVLLSNI HAKSREWEGV AKVRSLMNNR GVKKEPGVSW IGIRNQTHVF LAEDNQHPEI
601: TLIYAKVKEV MSKIKPLGYS PDVAGAFHDV DEEQREDNLS YHSEKLAVAY GLIKTPEKSP LYVTKNVRIC DDCHSAIKLI SKISKRYIVI RDSNRFHHFL
701: DGQCSCCDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)