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AT5G39670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G29000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AB012243EMBL:AY058192EMBL:AY098977EMBL:CP002688EnsemblPlants:AT5G39670
EnsemblPlants:AT5G39670.1entrez:833963Gene3D:1.10.238.10GeneID:833963Genevisible:Q93Z27GO:GO:0005509Gramene:AT5G39670.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF574HOGENOM:HOG000243879InParanoid:Q93Z27IntAct:Q93Z27InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT5G39670OMA:RIDFYGFPaxDb:Q93Z27Pfam:PF13499Pfam:Q93Z27Pfscan:PS50222
PhylomeDB:Q93Z27PRIDE:Q93Z27PRO:PR:Q93Z27PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q93Z27Proteomes:UP000006548
RefSeq:NP_568568.1scanprosite:PS00018SMART:SM00054SMR:Q93Z27STRING:3702.AT5G39670.1SUPFAM:SSF47473TAIR:AT5G39670
TMHMM:TMhelixUniGene:At.19755UniProt:Q93Z27
Coordinates (TAIR10) chr5:+:15883270..15883884
Molecular Weight (calculated) 23835.20 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.47
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)