AT5G39630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vesicle transport v-SNARE family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vesicle transport v-SNARE family protein; FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 1365 Blast hits to 1171 proteins in 272 species: Archae - 32; Bacteria - 107; Metazoa - 393; Fungi - 191; Plants - 155; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15868262..15869714 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23936.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||
| Length | 207 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNVFHEYDQ QYSELSINLS KKCSLAFSLK GGEKKEKLSE ITYDLENAEK LISKMDHAAS NLPPNIKSIL LEKLKESKSS LKRLRNEIKR NTSENLKVTT 101: REEVLEAEKA DLADQRSRLM KSTEGLVRTR EMIKDSQRKL LETENIGISI LENLQRQKES LQNSQAMLHE IDDTVKESRS IVRSIKIKEF FTVTAPIIIY 201: FLFKLVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)