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AT5G39630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.926
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15342965 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vesicle transport v-SNARE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vesicle transport v-SNARE family protein; FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 1365 Blast hits to 1171 proteins in 272 species: Archae - 32; Bacteria - 107; Metazoa - 393; Fungi - 191; Plants - 155; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111J90eggNOG:KOG1666EMBL:CP002688EMBL:DQ447016EnsemblPlants:AT5G39630EnsemblPlants:AT5G39630.1entrez:833959
GeneID:833959GO:GO:0005622GO:GO:0006886GO:GO:0016020GO:GO:0016192Gramene:AT5G39630.1hmmpanther:PTHR21230
hmmpanther:PTHR21230:SF31InterPro:IPR007705InterPro:IPR010989KEGG:ath:AT5G39630KO:K08493ncoils:CoilOMA:NVFHEYD
Pfam:PF05008Pfam:PF12352PhylomeDB:Q1PDQ2PRO:PR:Q1PDQ2Proteomes:UP000006548RefSeq:NP_198779.1STRING:3702.AT5G39630.1
SUPFAM:SSF47661SUPFAM:SSF58038TAIR:AT5G39630UniGene:At.55257UniProt:Q1PDQ2
Coordinates (TAIR10) chr5:+:15868262..15869714
Molecular Weight (calculated) 23936.00 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.59
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNVFHEYDQ QYSELSINLS KKCSLAFSLK GGEKKEKLSE ITYDLENAEK LISKMDHAAS NLPPNIKSIL LEKLKESKSS LKRLRNEIKR NTSENLKVTT
101: REEVLEAEKA DLADQRSRLM KSTEGLVRTR EMIKDSQRKL LETENIGISI LENLQRQKES LQNSQAMLHE IDDTVKESRS IVRSIKIKEF FTVTAPIIIY
201: FLFKLVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)