AT5G39560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.892 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, cauline leaf, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1); Has 3031 Blast hits to 2577 proteins in 170 species: Archae - 8; Bacteria - 187; Metazoa - 1514; Fungi - 7; Plants - 1159; Viruses - 28; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15841885..15843096 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46448.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLPFPATMI SEVEQPKEKR SLSSEPPSLM SLPYEIIENI LARISKWSYP NLSLVSKSFL SLLSSPQLYK TRSEIGTTEP CLYFCLESAN HSSPQWYTLW 101: MKPDETLTGT GTIHDYSLIP LPSSSPVLRT STVAVGSEIY VIGGHFNRSS SVRIFDCRSN TWRDGPNMTV ARSDPVAVLI DQRIYVLGGR EMDESDDWFE 201: VFDIKTQTWR ALPSFRAGLE LRRYIVWPNR YFPRLGDSQT AVRLINVNPN ALEGKLYVAA QINDYTYEPK DDTWKVVSKS SIRRVKVWCV IENVMYACHD 301: VFLRWYDYED RRWREIQGLE ELCYHPTRGF SGAERIVNYG GKLVVMWRPV QSDGKDKIEI WCAQIALEKR SKDEIWGKIE WINSVLTVPK LCDLCYSCVV 401: VSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)