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AT5G39510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16947054 (2007): Golgi trans-Golgi network
  • PMID:16947054 (2007): Golgi trans-Golgi network multivesicular body
  • PMID:15797025 (2005): plant-type vacuole
  • PMID:15342965 (2004): plant-type vacuole
  • PMID:11226186 (2001): endoplasmic reticulum
  • PMID:11226186 (2001): Golgi trans-Golgi network
  • PMID:11226186 (2001): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vesicle transport v-SNARE family protein
Curator
Summary (TAIR10)
Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.
Computational
Description (TAIR10)
SHOOT GRAVITROPSIM 4 (SGR4); FUNCTIONS IN: receptor activity; INVOLVED IN: gravitropism, Golgi to vacuole transport, protein targeting to vacuole; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: vesicle transport V-snare 13 (TAIR:AT3G29100.1); Has 744 Blast hits to 742 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 144; Plants - 174; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioGrid:19198eggNOG:ENOG4111J90eggNOG:KOG1666EMBL:AB009054EMBL:AF114750EMBL:AY070486EMBL:AY091707
EMBL:CP002688EnsemblPlants:AT5G39510EnsemblPlants:AT5G39510.1entrez:833947GeneID:833947Genevisible:Q9SEL6GO:GO:0000149
GO:GO:0000325GO:GO:0005484GO:GO:0005770GO:GO:0005773GO:GO:0005774GO:GO:0005802GO:GO:0006623
GO:GO:0009630GO:GO:0016021GO:GO:0016192GO:GO:0031902GO:GO:0061025Gramene:AT5G39510.1hmmpanther:PTHR21230
hmmpanther:PTHR21230:SF33HOGENOM:HOG000116573InParanoid:Q9SEL6IntAct:Q9SEL6InterPro:IPR007705InterPro:IPR010989InterPro:IPR027027
iPTMnet:Q9SEL6KEGG:ath:AT5G39510KO:K08493MINT:MINT-8070957OMA:LIMSTERPaxDb:Q9SEL6Pfam:PF05008
Pfam:PF12352Pfam:Q9SEL6PhylomeDB:Q9SEL6PIRSF:PIRSF028865PRIDE:Q9SEL6PRO:PR:Q9SEL6ProteinModelPortal:Q9SEL6
Proteomes:UP000006548RefSeq:NP_198767.1SMR:Q9SEL6STRING:3702.AT5G39510.1SUPFAM:SSF47661SUPFAM:SSF58038TAIR:AT5G39510
tair10-symbols:ATVTI11tair10-symbols:ATVTI1Atair10-symbols:SGR4tair10-symbols:VTI11tair10-symbols:VTI1Atair10-symbols:ZIGtair10-symbols:ZIG1
TMHMM:TMhelixUniGene:At.30339UniGene:At.71131UniProt:Q9SEL6
Coordinates (TAIR10) chr5:+:15822035..15823591
Molecular Weight (calculated) 24952.40 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.44
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDVFDGYER QYCELSASLS KKCSSAISLD GEQKKQKLSE IKSGLENAEV LIRKMDLEAR TLPPNLKSSL LVKLREFKSD LNNFKTEVKR ITSGQLNAAA
101: RDELLEAGMA DTKTASADQR ARLMMSTERL GRTTDRVKDS RRTMMETEEI GVSILQDLHG QRQSLLRAHE TLHGVDDNIG KSKKILTDMT RRMNKNKWTI
201: GAIIIALIAA IFIILYFKLT K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)