suba logo
AT5G39410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Saccharopine dehydrogenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Saccharopine dehydrogenase ; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3268eggNOG:KOG2733EMBL:BT029180EnsemblPlants:AT5G39410EnsemblPlants:AT5G39410.1entrez:833937ExpressionAtlas:Q058N8
Gene3D:3.40.50.720GeneID:833937GO:GO:0016491Gramene:AT5G39410.1hmmpanther:PTHR12286hmmpanther:PTHR12286:SF5InterPro:IPR005097
InterPro:IPR016040iPTMnet:Q058N8KEGG:ath:AT5G39410OMA:VQYAAYIPaxDb:Q058N8Pfam:PF03435Pfam:Q8LGI2
PhylomeDB:Q058N8PRIDE:Q058N8ProteinModelPortal:Q058N8RefSeq:NP_568564.1STRING:3702.AT5G39410.1SUPFAM:SSF51735TAIR:AT5G39410
UniGene:At.30348UniGene:At.49110UniProt:Q058N8UniProt:Q8LGI2
Coordinates (TAIR10) chr5:-:15768415..15770274
Molecular Weight (calculated) 49683.80 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.18
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPTQKPEPV YDMVILGASG FTGKYVVREA LKFLQTPSSS PLKSLALAGR NPTRLTQSLE WAARPNPPPS SVAILTADTS DPDSLRRLCT QTKLILNCVG
101: PFRIHGDPVV SACADSGCDY LDISGEPEFM ERMEANYHDR AEETGSLIVS ACGFDSIPAE LGLLFNAKQW VSPSVPNQIE AYLSLESDKK IAGNFGTYES
201: AVLGVANAEK LKELRRSRPR RPRPTICGPP AKGPTLENQK TIGLWALKLP SADAVVVRRT LTTLTEKPHG LPGINESPEQ IQKREAFWSS IKPAHFGVKI
301: TSKSLFGIFR YVTLGVSLGL LSKFSFGRWL LLKFPSVFSL GWFQKKGPSE EEVESATFKM WFIGRGYSEE SLASQGETKP DLEIITRISG PEIGYITTPI
401: TLVQCGLIVL GQRESLVKGG VYTPGIVFGS TDIQQRLEDN GISFELISKI KTQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)