AT5G39350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 45149 Blast hits to 14161 proteins in 247 species: Archae - 1; Bacteria - 11; Metazoa - 167; Fungi - 118; Plants - 44194; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15750929..15752962 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75964.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 677 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEVLRRANN ALSSVKQYQS LLNHFAATQS ISKTKALHCH VITGGRVSGH ILSTLSVTYA LCGHITYARK LFEEMPQSSL LSYNIVIRMY VREGLYHDAI 101: SVFIRMVSEG VKCVPDGYTY PFVAKAAGEL KSMKLGLVVH GRILRSWFGR DKYVQNALLA MYMNFGKVEM ARDVFDVMKN RDVISWNTMI SGYYRNGYMN 201: DALMMFDWMV NESVDLDHAT IVSMLPVCGH LKDLEMGRNV HKLVEEKRLG DKIEVKNALV NMYLKCGRMD EARFVFDRME RRDVITWTCM INGYTEDGDV 301: ENALELCRLM QFEGVRPNAV TIASLVSVCG DALKVNDGKC LHGWAVRQQV YSDIIIETSL ISMYAKCKRV DLCFRVFSGA SKYHTGPWSA IIAGCVQNEL 401: VSDALGLFKR MRREDVEPNI ATLNSLLPAY AALADLRQAM NIHCYLTKTG FMSSLDAATG LVHVYSKCGT LESAHKIFNG IQEKHKSKDV VLWGALISGY 501: GMHGDGHNAL QVFMEMVRSG VTPNEITFTS ALNACSHSGL VEEGLTLFRF MLEHYKTLAR SNHYTCIVDL LGRAGRLDEA YNLITTIPFE PTSTVWGALL 601: AACVTHENVQ LGEMAANKLF ELEPENTGNY VLLANIYAAL GRWKDMEKVR SMMENVGLRK KPGHSTIEIR SNSVDTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)