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AT5G39250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.880
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 68 Blast hits to 68 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:19172DNASU:833921eggNOG:ENOG410IKNPeggNOG:ENOG4111GKSEMBL:AB010694EMBL:AY091074EMBL:AY122944
EMBL:CP002688EnsemblPlants:AT5G39250EnsemblPlants:AT5G39250.1entrez:833921GeneID:833921Genevisible:Q9FL82Gramene:AT5G39250.1
hmmpanther:PTHR20995hmmpanther:PTHR20995:SF15HOGENOM:HOG000240157InParanoid:Q9FL82IntAct:Q9FL82InterPro:IPR001810KEGG:ath:AT5G39250
OMA:CICSRKWPaxDb:Q9FL82Pfam:PF12937Pfam:Q9FL82Pfscan:PS50181PhylomeDB:Q9FL82PRIDE:Q9FL82
PRO:PR:Q9FL82PROSITE:PS50181ProteinModelPortal:Q9FL82Proteomes:UP000006548RefSeq:NP_198741.1SMART:SM00256SMR:Q9FL82
STRING:3702.AT5G39250.1SUPFAM:SSF81383TAIR:AT5G39250UniGene:At.30357UniProt:Q9FL82
Coordinates (TAIR10) chr5:+:15724860..15725618
Molecular Weight (calculated) 29301.30 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.14
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSEEVLKNV FPLLEGEDLA SCMGVCKQWR DIARDDFYWK CQCAKKWPSV CKRHKPPTET YYKMYQTFSK RRLNRALPPP RLSFENLEFF IDIWSEERLV
101: FSGLIPGVAL ENGIETLPLG ISNVLRTHLG RPDYKMVVPA EPRFTIPLNQ SVSVSVLVAR NDSDKVARII NRSVFDYIDR SSYRALAFEY LDLSPCYPFI
201: SGIRAWISLL FMDVEDMNDD GLLDVFGIQL DFNDVADTKE EVLWLLDMLD WK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)