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AT5G39050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G39080.1); Has 1994 Blast hits to 1978 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 1963; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G39050-MONOMERBioCyc:MetaCyc:AT5G39050-MONOMEREC:2.3.1.-eggNOG:ENOG410J9HUeggNOG:ENOG4111A8VEMBL:AB016892EMBL:AY052335
EMBL:BT002269EMBL:CP002688EnsemblPlants:AT5G39050EnsemblPlants:AT5G39050.1entrez:833897Gene3D:3.30.559.10GeneID:833897
Genevisible:Q940Z5GO:GO:0005829GO:GO:0009636GO:GO:0050736Gramene:AT5G39050.1hmmpanther:PTHR31625hmmpanther:PTHR31625:SF5
HOGENOM:HOG000237788InParanoid:Q940Z5InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT5G39050ncoils:CoilOMA:DHVKITT
PaxDb:Q940Z5Pfam:PF02458Pfam:Q940Z5PhylomeDB:Q940Z5PRIDE:Q940Z5PRO:PR:Q940Z5ProteinModelPortal:Q940Z5
Proteomes:UP000006548RefSeq:NP_568561.4SMR:Q940Z5STRING:3702.AT5G39050.1SUPFAM:SSF52777TAIR:AT5G39050UniGene:At.22519
UniGene:At.75143UniProt:Q940Z5
Coordinates (TAIR10) chr5:+:15634596..15636005
Molecular Weight (calculated) 51767.80 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.08
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNEEMESSL KVIDVARVTP SNSDSSESLT LPLTFFDLLW YKLHAVERVI FYKLTDASRP FFDSVIVPNL KTSLSSSLSH YLPLAGKLVW EPLDPKPKIV
101: YTPNDAVSFT VAESNADFSR LTGKEPFPTT ELYPLVPELH VSDDSASAVS FQVTLFPNQG FCISVNAHHA VLDGKTTTNF LKSWARTCKN QDSFLPQDLI
201: PVYDRTVIKD PMDLDTKILN AWHRVAKVFT GGKEPENPKS LKLLWSPEIG PDVFRYTLNL TREDIQKLRE RLKKESSSSS VSSSPKELRL STFVIVYSYA
301: LTCLIKARGG DPSRPVGYGF AVDCRSLMVP PVPSSYFGNC VSACFKMSLT AETFMSEEGF LAAARMVSDS VEALDENVAL KIPEILEGFT TLSPGTQVLS
401: VAGSTRFGVY GLDFGWGRPE KVVVVSIDQG EAISFAESRD GSGGVELGFS LKKHEMDVLV DLLHKGLEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)