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AT5G39040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17171374 (2007): plant-type vacuole
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transporter associated with antigen processing protein 2
Curator
Summary (TAIR10)
Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.
Computational
Description (TAIR10)
transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G39040-MONOMERBioGrid:19147eggNOG:COG1132eggNOG:KOG0058
EMBL:AB016892EMBL:AK229810EMBL:AY078410EMBL:CP002688
EMBL:DQ469798EnsemblPlants:AT5G39040EnsemblPlants:AT5G39040.1entrez:833896
Gene3D:3.40.50.300GeneID:833896Genevisible:Q0WML0GO:GO:0000325
GO:GO:0005215GO:GO:0005524GO:GO:0005773GO:GO:0005774
GO:GO:0010044GO:GO:0016021GO:GO:0042626GO:GO:0055085
Gramene:AT5G39040.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF194InParanoid:Q0WML0
InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871
InterPro:IPR027417KEGG:ath:AT5G39040OMA:SREFAVRPaxDb:Q0WML0
Pfam:PF00005Pfam:PF00664Pfam:Q0WML0Pfscan:PS50893
Pfscan:PS50929PhylomeDB:Q0WML0PRIDE:Q0WML0PRO:PR:Q0WML0
PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q0WML0
Proteomes:UP000006548RefSeq:NP_198720.2scanprosite:PS00211SMART:SM00382
SMR:Q0WML0STRING:3702.AT5G39040.1SUPFAM:SSF52540SUPFAM:SSF90123
TAIR:AT5G39040tair10-symbols:ALS1tair10-symbols:ATTAP2tair10-symbols:TAP2
TCDB:3.A.1.201.8TMHMM:TMhelixUniGene:At.9429UniProt:Q0WML0
Coordinates (TAIR10) chr5:+:15625660..15629621
Molecular Weight (calculated) 69107.60 Da
IEP (calculated) 8.28
GRAVY (calculated) 0.18
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNKKLLTGG SSKTHGSGSS YRDPLLQNQE DKPKANGSEN GLNDLEHGVV EAANVGFGRV FALAKPDAGK LVIGTIALLI GSTTNLLVPK FGGMIIDIVS
101: RDVKTPEQQT ESLIAVRNAV VIILLIVVIG SICTALRAWL FNSASERVVA RLRKDLFRHL MHQEIAFYDV TKTGELLSRL SEDTQIIKNA ATTNLSEALR
201: NVTTALIGVG FMFTSSWKLT LLALVVVPVI SVAVKQFGRY LRELSHTTQA AAAVAASIAE ESFGAVRTVR SFAKESYMVS QYSKKVDETL KLGLKQAVLV
301: GLFFGGLNAA FTLSVITVVS YGAYLTIYGS MTVGALTSFI LYSLTVGSSV SSLSSLYTTA MKAAGASRRV FQILDRVSSM SSSGDKCPVG NPDGDVELND
401: VWFAYPSRPS HMILKGISLR LTPGSKVALV GPSGGGKTTI ANLIERFYDP LKGKILLNGV SLMEISHQYL HKQISIVSQE PILFNCSVEE NIAYGFDGEA
501: SFTDIENAAK MANAHEFIEA FPDKYNTVVG ERGLRLSGGQ KQRIAIARAL LTNPSVLLLD EATSALDAES EYLVQDAMDS LMAGRTVLVI AHRLSTVKTA
601: DCVAVISDGE VAEKGTHDEL LSLNGIYTNL VKRQLQSSSS VTTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)