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AT5G38895.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.946
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY035147EMBL:AY150493EMBL:CP002688EnsemblPlants:AT5G38895EnsemblPlants:AT5G38895.1
entrez:833881ExpressionAtlas:Q94C65Gene3D:3.30.40.10GeneID:833881GO:GO:0008270Gramene:AT5G38895.1hmmpanther:PTHR22763
hmmpanther:PTHR22763:SF34HOGENOM:HOG000005881IntAct:Q94C65InterPro:IPR001841InterPro:IPR013083Pfam:PF13639Pfscan:PS50089
PhylomeDB:Q94C65PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568560.1SMART:SM00184SMR:Q94C65STRING:3702.AT5G38895.3
SUPFAM:SSF57850TAIR:AT5G38895UniGene:At.30375UniGene:At.49100UniProt:Q94C65
Coordinates (TAIR10) chr5:+:15572084..15573315
Molecular Weight (calculated) 24518.40 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.45
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAFCCCFQV DLFESYVNPN TSITRNCPCL NCFLQSFMDL YASLFSRGGM HPIPSTVETA TVMNSTTALD DSLSSVYHSP PTPLPYDADP RYFRFVKGSS
101: HSGEESEPLR GDTEMSSEAL GDGGAKWSKS DSEDGSKEVY TKGSSTFTKS KTMPGIEVYY ADSDDEDICP TCLDDYTLEN PKIITKCSHH FHLSCIYEWM
201: ERSETCPVCG KVMAFDENET S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)