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AT5G38890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.948
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Exosome complex, component CSL4 (InterPro:IPR019495); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:833880eggNOG:COG1096eggNOG:KOG3409EMBL:AK316921EMBL:BT030080EMBL:CP002688EnsemblPlants:AT5G38890
EnsemblPlants:AT5G38890.1entrez:833880Gene3D:2.40.50.140GeneID:833880GO:GO:0000178GO:GO:0003723Gramene:AT5G38890.1
hmmpanther:PTHR12686hmmpanther:PTHR12686:SF8HOGENOM:HOG000177330IntAct:A2RVT9InterPro:IPR003029InterPro:IPR012340InterPro:IPR019495
InterPro:IPR025721KEGG:ath:AT5G38890KO:K07573OMA:MDEMFRVPfam:PF10447Pfam:PF14382Pfscan:PS50126
PhylomeDB:A2RVT9PROSITE:PS50126Proteomes:UP000006548Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_568559.2SMR:A2RVT9
STRING:3702.AT5G38890.1SUPFAM:SSF110324SUPFAM:SSF50249TAIR:AT5G38890UniGene:At.30376UniProt:A2RVT9
Coordinates (TAIR10) chr5:+:15569507..15570898
Molecular Weight (calculated) 20233.40 Da
IEP (calculated) 7.51
GRAVY (calculated) 0.02
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTGLVTPGD VIGKATEFKA GKGAYVNDAT IYASLTGTCR IVSPLPESID QRAIVEVTGH KAHGPIPETG SVVIARVTKV MTKMAAVDIL CVGSKAVREN
101: FAGVIRQQDV RATEIDKVDM HQSFHAGDIV RAMVLSLGDA RAYYLSTAKN ELGVVSAESA AGETMVPISW TEMQCPLSGQ TEQRKVAKVG N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)