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AT5G38800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic leucine-zipper 43
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic leucine-zipper 43 (bZIP43); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 42 (TAIR:AT3G30530.1); Has 1520 Blast hits to 1514 proteins in 119 species: Archae - 2; Bacteria - 0; Metazoa - 100; Fungi - 7; Plants - 1350; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
BioGrid:19122eggNOG:ENOG410IZ63eggNOG:ENOG410YWTIEMBL:AB009048EMBL:BT002834EMBL:CP002688EnsemblPlants:AT5G38800
EnsemblPlants:AT5G38800.1entrez:833871GeneID:833871Genevisible:Q9FMC2GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0043565Gramene:AT5G38800.1hmmpanther:PTHR22952hmmpanther:PTHR22952:SF201HOGENOM:HOG000238858InParanoid:Q9FMC2IntAct:Q9FMC2
InterPro:IPR004827KEGG:ath:AT5G38800ncoils:CoilOMA:ENHQLLRPaxDb:Q9FMC2Pfam:PF00170Pfam:Q9FMC2
Pfscan:PS50217PhylomeDB:Q9FMC2PRO:PR:Q9FMC2PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:Q9FMC2Proteomes:UP000006548
RefSeq:NP_198696.1scanprosite:PS00036SMART:SM00338SMR:Q9FMC2STRING:3702.AT5G38800.1SUPFAM:SSF57959TAIR:AT5G38800
tair10-symbols:AtbZIP43tair10-symbols:bZIP43UniGene:At.30383UniProt:Q9FMC2
Coordinates (TAIR10) chr5:-:15538305..15538802
Molecular Weight (calculated) 19264.60 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.91
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPSTNIFSL HGCPPSYLSH IPTSSPFCGQ NPNPFFSFET GVNTSQFMSL ISSNNSTSDE AEENHKEIIN ERKQKRKISN RESARRSRMR KQRQVDELWS
101: QVMWLRDENH QLLRKLNCVL ESQEKVIEEN VQLKEETTEL KQMISDMQLQ NQSPFSCIRD DDDVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)