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AT5G38790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JN7YeggNOG:ENOG411186CEMBL:AB011478EMBL:CP002688EnsemblPlants:AT5G38790EnsemblPlants:AT5G38790.1entrez:833870
GeneID:833870Gramene:AT5G38790.1hmmpanther:PTHR33347hmmpanther:PTHR33347:SF6HOGENOM:HOG000152527KEGG:ath:AT5G38790OMA:YEGYNIY
PhylomeDB:Q9FKQ9Proteomes:UP000006548RefSeq:NP_198695.1TAIR:AT5G38790UniGene:At.55229UniProt:Q9FKQ9
Coordinates (TAIR10) chr5:+:15533785..15534180
Molecular Weight (calculated) 15397.10 Da
IEP (calculated) 6.25
GRAVY (calculated) -1.89
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKEECSSSE SGWTTYLSSP IKVDEDEVVD EDYYYEGYNI YNYSSKVEHE EERNKDSDDS MASDASSGPN YQRFHQKNKA LDLKNGKNEG NSKSKNDDDH
101: HNHYHDGKKT SNSYRKKDKK KRENKSTYRM K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)