suba logo
AT5G38480.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general regulatory factor 3
Curator
Summary (TAIR10)
general regulatory factor, a 14-3-3 gene
Computational
Description (TAIR10)
general regulatory factor 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19087eggNOG:COG5040eggNOG:KOG0841EMBL:AB005231EMBL:AB005248EMBL:AF412093EMBL:AK226217
EMBL:AK228478EMBL:AY093976EMBL:CP002688EMBL:L09110EMBL:U09375EMBL:X74140EnsemblPlants:AT5G38480
EnsemblPlants:AT5G38480.1EnsemblPlants:AT5G38480.2entrez:833836ExpressionAtlas:P42644GeneID:833836Genevisible:P42644GO:GO:0005524
GO:GO:0005618GO:GO:0005634GO:GO:0005737GO:GO:0005739GO:GO:0005773GO:GO:0005794GO:GO:0005829
GO:GO:0005886GO:GO:0006995GO:GO:0009409GO:GO:0009506GO:GO:0009507GO:GO:0009631GO:GO:0009873
GO:GO:0016036GO:GO:0019222GO:GO:0050826GO:GO:0051365hmmpanther:PTHR18860HOGENOM:HOG000240379IntAct:P42644
InterPro:IPR000308InterPro:IPR023409InterPro:IPR023410iPTMnet:P42644KEGG:ath:AT5G38480KO:K06630MINT:MINT-8067157
ncoils:CoilOMA:MSTREENPANTHER:PTHR18860PaxDb:P42644Pfam:P42644Pfam:PF00244PhylomeDB:P42644
PIR:S47969PIR:S57277PIRSF:PIRSF000868PRIDE:P42644PRINTS:PR00305PRO:PR:P42644PROSITE:PS00796
PROSITE:PS00797ProteinModelPortal:P42644Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511RefSeq:NP_001031982.1RefSeq:NP_568557.1
scanprosite:PS00796scanprosite:PS00797SMART:SM00101SMR:P42644STRING:3702.AT5G38480.1SUPFAM:SSF48445TAIR:AT5G38480
tair10-symbols:GRF3tair10-symbols:RCI1UniGene:At.22344UniGene:At.22949UniProt:P42644
Coordinates (TAIR10) chr5:+:15410277..15411285
Molecular Weight (calculated) 28607.70 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.40
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)