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AT5G38430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Ribulose bisphosphate carboxylase (small chain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G38430-MONOMERBioGrid:19081EC:4.1.1.39eggNOG:COG4451eggNOG:ENOG410IM2HEMBL:AB005248EMBL:AF410283
EMBL:AY143814EMBL:CP002688EMBL:X14564EnsemblPlants:AT5G38430EnsemblPlants:AT5G38430.1entrez:833830Gene3D:3.30.190.10
GeneID:833830Genevisible:P10796GO:GO:0004497GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009637
GO:GO:0009853GO:GO:0009941GO:GO:0010114GO:GO:0010218GO:GO:0016020GO:GO:0016984GO:GO:0019253
GO:GO:0031969GO:GO:0048046Gramene:AT5G38430.1gramene_plant_reactome:1119519gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4
HOGENOM:HOG000141332InParanoid:P10796IntAct:P10796InterPro:IPR000894InterPro:IPR024680InterPro:IPR024681KEGG:00630+4.1.1.39
KEGG:00710+4.1.1.39KEGG:ath:AT5G38430KO:K01602OMA:HRENGNSPaxDb:P10796Pfam:P10796Pfam:PF00101
Pfam:PF12338PhylomeDB:P10796PIR:S03717PRIDE:P10796PRINTS:PR00152PRO:PR:P10796ProteinModelPortal:P10796
Proteomes:UP000006548RefSeq:NP_198659.1SMART:SM00961SMR:P10796STRING:3702.AT5G38430.1SUPFAM:SSF55239TAIR:AT5G38430
UniGene:At.25361UniGene:At.25577UniGene:At.39706UniGene:At.46639UniGene:At.49098UniGene:At.70032UniGene:At.70053
UniGene:At.73308UniProt:P10796World-2DPAGE:0003:P10796
Coordinates (TAIR10) chr5:-:15384350..15385155
Molecular Weight (calculated) 20287.30 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.19
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)