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AT5G38420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Ribulose bisphosphate carboxylase (small chain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G38420-MONOMERBioGrid:19080EC:4.1.1.39eggNOG:COG4451eggNOG:ENOG410IM2HEMBL:AB005248EMBL:AY059939
EMBL:AY062437EMBL:AY062458EMBL:AY062543EMBL:AY093288EMBL:BT002094EMBL:BT002554EMBL:BT003356
EMBL:CP002688EMBL:X14564EMBL:Z18199EnsemblPlants:AT5G38420EnsemblPlants:AT5G38420.1entrez:833829Gene3D:3.30.190.10
GeneID:833829Genevisible:P10797GO:GO:0004497GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009637
GO:GO:0009853GO:GO:0009941GO:GO:0010114GO:GO:0010218GO:GO:0016020GO:GO:0016984GO:GO:0019253
GO:GO:0022626GO:GO:0048046Gramene:AT5G38420.1gramene_plant_reactome:1119519gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4
HOGENOM:HOG000141332InParanoid:P10797IntAct:P10797InterPro:IPR000894InterPro:IPR024680InterPro:IPR024681KEGG:00630+4.1.1.39
KEGG:00710+4.1.1.39KEGG:ath:AT5G38420KO:K01602OMA:CIAFIAYPaxDb:P10797Pfam:P10797Pfam:PF00101
Pfam:PF12338PhylomeDB:P10797PIR:S03718PRIDE:P10797PRINTS:PR00152PRO:PR:P10797ProteinModelPortal:P10797
Proteomes:UP000006548RefSeq:NP_198658.1SMART:SM00961SMR:P10797STRING:3702.AT5G38420.1SUPFAM:SSF55239TAIR:AT5G38420
UniGene:At.46639UniGene:At.49098UniGene:At.67185UniGene:At.70032UniGene:At.70053UniGene:At.75410UniProt:P10797
Coordinates (TAIR10) chr5:-:15381203..15381978
Molecular Weight (calculated) 20351.30 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.21
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMFSSTA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)