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AT5G38400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB005248EMBL:CP002688EnsemblPlants:AT5G38400EnsemblPlants:AT5G38400.1
entrez:833827GeneID:833827Gramene:AT5G38400.1HOGENOM:HOG000152430
KEGG:ath:AT5G38400OMA:HARMTAKProteomes:UP000006548RefSeq:NP_198656.1
TAIR:AT5G38400UniGene:At.55218UniProt:Q9FF22
Coordinates (TAIR10) chr5:+:15375846..15376301
Molecular Weight (calculated) 18045.40 Da
IEP (calculated) 9.84
GRAVY (calculated) -1.13
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MHVDSMKRAR VSAVYEGKER NRSSNGEETR REQSKHARMT AKARMNVYKE SMKPLPPKRK KSLMIISLMR KKEDTQDDQN NVTVVEKEKE EKEKGTVQNI
101: RENAEMLSSK CVEEWPHMLT YEEEWTWFAF AFGWGWWQRY DAVMSGKSWF N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)