AT5G38350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15328659..15331528 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95822.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 833 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEKIATDVS NMLNNYSPSR DFDGLIGMDA HMKEMESLLC LDSDEVRMIG IWGPSGIGKT TIARVLYSQF SENFELSIFM GNIKELMYTR PVCSDEYSAK 101: IQLQKQFLSQ IINHKDMELH HLGVAQDRLN DKKVLIVLDS IDQSIQLDAI AKETRWFGHG SRIIITTQDQ KLLKAHGINH IYKVEFPSAY EAYQMFCMYA 201: FGQNFPNDGF EELAWEVTKL LGHLPLGLRV MGSHFRGMSR HEWVNALPRL KIRLDASIQS ILKFSYDALC EEDKDLFLHI ACLFNNQEMV EVEDYLALSF 301: LDVRQGFHLL AEKSLINLKF LSTNCTRIEM HNLLVQLGKD IVRHKPGHQS ICEPGKRQFL IDARDICEVL TDNTGNRNVV GIFLEVRNLS CQLNISERAF 401: DGMSNLKFLR FHDPYDDESD KLYLPQGLNN LPQKLRLIEW SRFPMTCLPS NFCTKYLVEI RMKNSKLQNL WQGNQPLGNL KRMDLSESKH LKELPDLSTA 501: TNLEYLIMSG CISLVELPSS IGKLRKLLML SLRGCSKLEA LPTNINLESL DYLDLTDCLL IKKFPEISTN IKDLKLTKTA IKEVPSTIKS WSHLRKLEMS 601: YSENLKELPH ALDIITTLYI NDTEMQEIPQ WVKKISHLQT LGLEGCKRLV TIPQLSDSLS QLVVTNCESL ERLNFSFQNH PERFLWFLNC FKLNNEAREF 701: IQTSSTHAIL PSREVPANFT YRANGSSIMV NLNHRPLSTT LRFKACVLLV KKIDNDKEEA ADRRTTVIPR IRENDKIGVD VPWRYRFHVP TILEDHLLTF 801: QIEADVTSNK LLFSFDIKDN NQAVIKECGV LQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)