AT5G38340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G65850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15320507..15324061 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120865.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1059 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSSFLSSFC ATAIIFFTLF GTIYFMFYRK VKSHQENKTI ASSLALPTIP SSLSRKYDVF PSFHGADVRK TFLSHMLKEF KRKGIVPFID NDIDRSKSIG 0101: PELDEAIRGS KIAIVMLSKN YASSSWCLNE LVEITKCRKD LNQTVMTIFY GVDPTDVKKQ TGEFGKVFER TCESKTEEQV KTWREVLDGA ATIAGEHWHI 0201: WDNEASMIEK ISIDVSNILN RSSPSRDFDD LIGMEAHMEK MKSLLSLHSN EVKMIGIWGP SGIGKTTIAR VLYNRFSGDF GLSVFMDNIK ELMHTRPVGS 0301: DDYSAKLHLQ NQLMSEITNH KETKITHLGV VPDRLKDNKV LIVLDSIDQS IQLDAIAKET QWFGPGSRII ITTQDQKLLE AHDINNIYKV EFPSKYEAFQ 0401: IFCTYAFGQN FPKDGFEKLA WEVTDLLGEL PLGLRVMGSH FRRMSKDDWV IALPRLKTRL DANIQSILKF SYDALSPEDK DLFLHIACLF NNEEIVKVED 0501: YLALDFLDAR HGLHLLAEKS LIDLEGVNYK VLKMHNLLEQ LGKEIVRYHP AHHSIREPEK RQFLVDTKDI CEVLADGTGS KSIKGICFDL DNLSGRLNIS 0601: ERAFEGMTNL KFLRVLRDRS EKLYLPQGLN YLPKKLRLIE WDYFPMKSLP SNFCTTYLVN LHMRKSKLEK LWEGKQPLGN LKWMNLSNSR NLKELPDLST 0701: ATKLQDLNLT RCSSLVEIPF SIGNTTNLEK LNLVMCTSLV ELPSSIGSLH KLRELRLRGC SKLEVLPTNI SLESLDNLDI TDCSLLKSFP DISTNIKHLS 0801: LARTAINEVP SRIKSWSRLR YFVVSYNENL KESPHALDTI TMLSSNDTKM QELPRWVKKI SRLETLMLEG CKNLVTLPEL PDSLSNIGVI NCESLERLDC 0901: SFYKHPNMFI GFVNCLKLNK EARELIQTSS STCSILPGRR VPSNFTYRKT GGSVLVNLNQ SPLSTTLVFK ACVLLVNKDD KKKEANGTSF QVYYRIMDKR 1001: KLGVIVPWRS AHGFVVPPIL AEHLLTFELE ADVKTNEFFF EFEVNRYEVV IKECGVLQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)