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AT5G38290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidyl-tRNA hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G38290-MONOMERBioCyc:ARA:GQT-445-MONOMEReggNOG:COG0193eggNOG:KOG2255EMBL:AB011481EMBL:AK118408EMBL:BT025030
EMBL:CP002688EnsemblPlants:AT5G38290EnsemblPlants:AT5G38290.1entrez:833811ExpressionAtlas:Q9FKN4Gene3D:3.40.50.1470GeneID:833811
Genevisible:Q9FKN4GO:GO:0004045GO:GO:0006397GO:GO:0008380GO:GO:0009570GO:GO:0030529HAMAP:MF_00083
hmmpanther:PTHR17224hmmpanther:PTHR17224:SF3HOGENOM:HOG000004797InParanoid:Q9FKN4InterPro:IPR001328InterPro:IPR018171iPTMnet:Q9FKN4
KEGG:ath:AT5G38290KO:K01056PANTHER:PTHR17224PaxDb:Q9FKN4Pfam:PF01195Pfam:Q9FKN4PhylomeDB:Q9FKN4
PRO:PR:Q9FKN4PROSITE:PS01195PROSITE:PS01196ProteinModelPortal:Q9FKN4Proteomes:UP000006548RefSeq:NP_198645.1scanprosite:PS01195
scanprosite:PS01196SMR:Q9FKN4STRING:3702.AT5G38290.2SUPFAM:SSF53178TAIR:AT5G38290TIGRfam:TIGR00447TIGRFAMs:TIGR00447
UniGene:At.30420UniProt:Q9FKN4
Coordinates (TAIR10) chr5:+:15303603..15305381
Molecular Weight (calculated) 27261.10 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.28
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCASSSPIT SPLYPKAYKF SQTKSNSKRF SSLRASLPVS DNKLLKFEYT PWLIVGLGNP GLKYYGTRHN IGFEMIDHIA RATDISMNTI QSKALVGIGS
101: VGEVPILLVK PQGYMNFSGE SVGPLAAYYQ IPLRHILMIY DDMGLSNGVL RLQPKGGHSQ HNGLKNVTEH LNGCRGYPRL SIGIGNPPGN MDMKAFLLQK
201: FSPLERKQMD EGLEQGVEGV KTLVEEGFSD SISRFNLGQK YKFHKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)