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AT5G38070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.668
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G01275.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AB028606EMBL:BT022069
EMBL:BT029464EMBL:CP002688EMBL:DQ086847EnsemblPlants:AT5G38070
EnsemblPlants:AT5G38070.1entrez:833787Gene3D:3.30.40.10GeneID:833787
GO:GO:0004842GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT5G38070.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF89HOGENOM:HOG000238177
InterPro:IPR011016InterPro:IPR013083InterPro:IPR022143InterPro:IPR033275
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G38070
OMA:FDEYSAPPANTHER:PTHR23012Pfam:PF12428Pfam:PF12906
Pfscan:PS51292PhylomeDB:Q9LS14PROSITE:PS51292Proteomes:UP000006548
RefSeq:NP_198623.1SMART:SM00744SMR:Q9LS14STRING:3702.AT5G38070.1
SUPFAM:SSF57850TAIR:AT5G38070TMHMM:TMhelixUniGene:At.20008
unipathway:UPA00143UniProt:Q9LS14
Coordinates (TAIR10) chr5:+:15190254..15191588
Molecular Weight (calculated) 29049.70 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.06
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDHLVLVVD RLSSDSGLGT VNRADPKADS VNEDGVSESI SAGADLCESK FVQCRICHDE DEDTNMDTPC SCSGTLKFAH HNCVQRWCNE KGDTVCEICR
101: QQYKPGYTAP RQLFHYTGIS MNFGSDWGIE GLDLRNPYFL TWGDADDDHD LYSFHSPTSL ICCRLIALLF VLLLFLRHSL PVLLGGVDDF SITLLMLPLV
201: RTLGILLIAY VFFKSFIVIQ RCRQERDTRL SGFSSDEETA PPRILMALPE RPELHVPVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)