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AT5G38020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.893
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G21950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G38020-MONOMEReggNOG:ENOG410IIJ3eggNOG:ENOG410Y96GEMBL:AK228053EMBL:BT006434EMBL:CP002688EnsemblPlants:AT5G38020
EnsemblPlants:AT5G38020.1entrez:833781Gene3D:3.40.50.150GeneID:833781GO:GO:0006633GO:GO:0008168Gramene:AT5G38020.1
hmmpanther:PTHR31009hmmpanther:PTHR31009:SF19HOGENOM:HOG000238197InterPro:IPR005299InterPro:IPR029063KEGG:ath:AT5G38020OMA:YKTGRTE
Pfam:PF03492PhylomeDB:Q84MB1Proteomes:UP000006548RefSeq:NP_198618.1SMR:Q84MB1STRING:3702.AT5G38020.1SUPFAM:SSF53335
TAIR:AT5G38020UniGene:At.30445UniProt:Q84MB1
Coordinates (TAIR10) chr5:-:15165953..15167612
Molecular Weight (calculated) 41644.70 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.32
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVLSMKGGD GEHSYANNSE GQKRLASDAK PVVVETVKEM IVKTDFPGCI KVADLGCSSG ENTLLVMSEI VNTIITSYQQ KGKNLPEINC CLNDLPDNDF
101: NTTFKLVPAF HKLLKMDVKG KCFISGVPGS FYSRLFPSKS LHFVHSSLCL HWLSKVPDGL EDNKKNVYLR SPCPPNVYKS YLTQFKNDFS LFLRLRADET
201: VPNGRMALTF VGRKSLDPLS KDCFQNWSSI SDSLLDLVSE GIVKESDVDS FNLPFYNPDE SEVREVIESE GSFKISNFET IFGLLFSYKT GRTEVKDDDD
301: NLDQSCRFEV IRKRASIIRS ITEPMLGAHF GDAIMDRLFE RYTYHLAERY DTLRNKPTVQ FFVSLTRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)