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AT5G37890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19019EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002EMBL:AB012241EMBL:AY072436EMBL:AY114722
EMBL:CP002688EnsemblPlants:AT5G37890EnsemblPlants:AT5G37890.1entrez:833768Gene3D:3.30.40.10Gene3D:3.90.890.10GeneID:833768
Genevisible:Q9FKD7GO:GO:0005634GO:GO:0005737GO:GO:0007275GO:GO:0008270GO:GO:0009411GO:GO:0016874
GO:GO:0042787GO:GO:0043161GO:GO:0061630Gramene:AT5G37890.1hmmpanther:PTHR10315hmmpanther:PTHR10315:SF43HOGENOM:HOG000154324
InParanoid:Q9FKD7IntAct:Q9FKD7InterPro:IPR001841InterPro:IPR004162InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083
InterPro:IPR013323InterPro:IPR018121KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G37890KO:K04506
OMA:NNKCPACPANTHER:PTHR10315PaxDb:Q9FKD7Pfam:PF03145Pfam:Q9FKD7Pfscan:PS50089Pfscan:PS51081
PhylomeDB:Q9FKD7PRO:PR:Q9FKD7PROSITE:PS50089PROSITE:PS51081ProteinModelPortal:Q9FKD7Proteomes:UP000006548RefSeq:NP_198605.2
SMR:Q9FKD7STRING:3702.AT5G37890.1SUPFAM:SSF49599SUPFAM:SSF57850TAIR:AT5G37890UniGene:At.30456UniPathway:UPA00143
UniProt:Q9FKD7
Coordinates (TAIR10) chr5:-:15090512..15091822
Molecular Weight (calculated) 32053.90 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.15
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)