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AT5G37570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB018107EMBL:CP002688
EnsemblPlants:AT5G37570EnsemblPlants:AT5G37570.1entrez:833735Gene3D:1.25.40.10
GeneID:833735Genevisible:Q9FHR3Gramene:AT5G37570.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF139HOGENOM:HOG000237569InParanoid:Q9FHR3InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT5G37570OMA:NQIHARIPaxDb:Q9FHR3
Pfam:PF01535Pfam:PF13041Pfam:Q9FHR3Pfscan:PS51375
PhylomeDB:Q9FHR3PRIDE:Q9FHR3PRO:PR:Q9FHR3PROSITE:PS51375
ProteinModelPortal:Q9FHR3Proteomes:UP000006548RefSeq:NP_198573.1SMR:Q9FHR3
STRING:3702.AT5G37570.1TAIR:AT5G37570TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.65593UniProt:Q9FHR3
Coordinates (TAIR10) chr5:-:14924494..14926146
Molecular Weight (calculated) 61655.80 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.05
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQRLSHPSL LSLETLFKLC KSEIHLNQIH ARIIRKGLEQ DQNLISIFIS SSSSSSSSLS YSSSVFERVP SPGTYLWNHL IKGYSNKFLF FETVSILMRM
101: MRTGLARPDE YTFPLVMKVC SNNGQVRVGS SVHGLVLRIG FDKDVVVGTS FVDFYGKCKD LFSARKVFGE MPERNAVSWT ALVVAYVKSG ELEEAKSMFD
201: LMPERNLGSW NALVDGLVKS GDLVNAKKLF DEMPKRDIIS YTSMIDGYAK GGDMVSARDL FEEARGVDVR AWSALILGYA QNGQPNEAFK VFSEMCAKNV
301: KPDEFIMVGL MSACSQMGCF ELCEKVDSYL HQRMNKFSSH YVVPALIDMN AKCGHMDRAA KLFEEMPQRD LVSYCSMMEG MAIHGCGSEA IRLFEKMVDE
401: GIVPDEVAFT VILKVCGQSR LVEEGLRYFE LMRKKYSILA SPDHYSCIVN LLSRTGKLKE AYELIKSMPF EAHASAWGSL LGGCSLHGNT EIAEVVARHL
501: FELEPQSAGS YVLLSNIYAA LDRWTDVAHL RDKMNENGIT KICGRSWISR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)