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AT5G37560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.914
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 7408 Blast hits to 4284 proteins in 281 species: Archae - 7; Bacteria - 615; Metazoa - 2514; Fungi - 1158; Plants - 1001; Viruses - 87; Other Eukaryotes - 2026 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1HeggNOG:KOG1812EMBL:CP002688EnsemblPlants:AT5G37560
EnsemblPlants:AT5G37560.1entrez:833734GeneID:833734GO:GO:0004842
GO:GO:0046872Gramene:AT5G37560.1hmmpanther:PTHR11685hmmpanther:PTHR11685:SF107
InParanoid:F4K784InterPro:IPR002867InterPro:IPR031127KEGG:ath:AT5G37560
OMA:INREEADPANTHER:PTHR11685PaxDb:F4K784Pfam:PF01485
Pfam:PF13456PRIDE:F4K784ProteinModelPortal:F4K784Proteomes:UP000006548
RefSeq:NP_198572.2SMART:SM00647SMR:F4K784STRING:3702.AT5G37560.1
SUPFAM:SSF57850TAIR:AT5G37560UniGene:At.55193UniProt:F4K784
Coordinates (TAIR10) chr5:+:14921986..14923790
Molecular Weight (calculated) 51021.30 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.53
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYAVTKDIP NRKGEGSSKV GQSTFETQSC VDNVVYKLYF KGLVSGETAT DKKAIVKVGF GVAICDEADN LFYGMNKSLY EAVINREEAD ILALITGLYE
101: SIHRGVKNVV ICCDDRQIYQ TIIGREKPQQ KNVHLLEEVQ RLRGRLASTG TVLVATRDDN FALRLAIDAL VKATQEKPLT CSICSDKTDA EHMLLNDKCL
201: HRHCFSCVKQ QVKVKLRSGI VPPCLEDGCK SELTLESCSM VLTPKLIEMW KRKMEEDLIP DAEKIYCPYR SCSMLMSKTE LSREAEQSNV RACIKCSELF
301: CIDCKVPWHS DLSCADYKRI HSERLVNDMM LKVLANDQMW RQCSECKHMI ELTEGCNHIT CRCGYEFCYR CGHKWTKYHH YSCQLMDNRE DEEDYNLHVD
401: AEVNNDDDDD EDYVFDEDYE EDDDDDDDDD GTTYSLEDFR REIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)