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AT5G37550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JN0PeggNOG:ENOG41115A3EMBL:AB018107EMBL:AB025630
EMBL:BT010710EMBL:BT010982EMBL:CP002688EnsemblPlants:AT5G37550
EnsemblPlants:AT5G37550.1entrez:833733GeneID:833733Gramene:AT5G37550.1
hmmpanther:PTHR34665hmmpanther:PTHR34665:SF2HOGENOM:HOG000152210IntAct:Q9FGI2
KEGG:ath:AT5G37550OMA:PRTVCGRPhylomeDB:Q9FGI2Proteomes:UP000006548
RefSeq:NP_198571.1STRING:3702.AT5G37550.1TAIR:AT5G37550UniGene:At.30481
UniProt:Q9FGI2
Coordinates (TAIR10) chr5:-:14919100..14919792
Molecular Weight (calculated) 26247.60 Da
IEP (calculated) 10.80
GRAVY (calculated) -0.88
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPFANYYIS TPIMSEKKSI TRSRNNSRKK RWSPTLFAGG GGGRGGGGDD ELATVKAAAW AWYQRHEGKP MMREFDLSKR AIRTPRPSRY KLEANKTMIL
101: SENKVSKPHS NHFLRGDQET KLSSLLDSYE IKSISKRIDE GSLPTIGFWN DHGQHYDHNM LQKKLEYDSK QENGLVKKMS IRNLWKGMIM MAPRTVCGRS
201: DDVDLGAYHR VGPRTKKVAP TSVNMRTGRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)