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AT5G37310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT2G01970.1); Has 1577 Blast hits to 1526 proteins in 319 species: Archae - 0; Bacteria - 2; Metazoa - 611; Fungi - 238; Plants - 464; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSVBeggNOG:KOG1277EMBL:AB017069EMBL:AK226936EMBL:CP002688EnsemblPlants:AT5G37310EnsemblPlants:AT5G37310.1
entrez:833705GeneID:833705Genevisible:Q9FHT4GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0009505GO:GO:0010008GO:GO:0016021Gramene:AT5G37310.1hmmpanther:PTHR10766hmmpanther:PTHR10766:SF58HOGENOM:HOG000216680
InParanoid:Q9FHT4InterPro:IPR004240InterPro:IPR020846KEGG:ath:AT5G37310OMA:RWKETEIPANTHER:PTHR10766PaxDb:Q9FHT4
Pfam:PF02990Pfam:Q9FHT4PhylomeDB:Q9FHT4PRIDE:Q9FHT4PRO:PR:Q9FHT4ProteinModelPortal:Q9FHT4Proteomes:UP000006548
RefSeq:NP_198547.3STRING:3702.AT5G37310.1SUPFAM:SSF103473TAIR:AT5G37310TMHMM:TMhelixUniGene:At.23699UniGene:At.46209
UniProt:Q9FHT4
Coordinates (TAIR10) chr5:-:14772836..14776093
Molecular Weight (calculated) 68083.00 Da
IEP (calculated) 7.47
GRAVY (calculated) 0.30
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLLPSMTSL LLVFLFLYGV SPVISDGSDH RYKVGDDVPL YANKVGPFHN PSETYRYFDL PFCSSAPVKE KKEALGEVLN GDRLVSAPYK LEFLGEKNSE
101: VACRKRLSRE DVAKFRDVIA KDYYFQMYYD DLPIWGFLGK VVKEGKTDPS EYKYYLFNHL QFEIFYNKDR VIEIIVRTDQ NFLVDLTEDK EVQVDFTYTV
201: RWKETEIPFE KRMEKYSLAS SMPHHLEIHW FSIINSCVTV LLLTGFLATI LMRVLKNDFV KYAHDEEAVD DQEETGWKLI HGDVFRFPKH KSLLAAALGS
301: GTQLFTLAVF IFMLALVGVF YPYNRGALFT ALVVIYALTS GIAGYTAASF YCQLEGTNWV RNVILTGSLF CGPLLITFSF LNTVAIAYQA TAALPFGTIV
401: VIFLIWALVT SPLLILGGIA GKNRKSEFQA PCRTTKYPRE IPPMRWYRRT LPQMAMAGFL PFSAIYIELY YIFASVWGHR IYTIYSILSI VFLILVIVTA
501: FITVALTYFQ LAAEDHEWWW RSLLCGGSTG LFIYAYCLYY YYARSDMSGF MQTSFFFGYM ACICYGFFLM LGTIGFCASL LFVRHIYRSI KCE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)