AT5G36930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 29210 Blast hits to 21550 proteins in 753 species: Archae - 26; Bacteria - 1901; Metazoa - 3973; Fungi - 162; Plants - 22241; Viruses - 4; Other Eukaryotes - 903 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14567771..14571907 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135738.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1188 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQGRERIPE RWTYDVFVSF RGADVRKNFL SHLYDSLRRC GISTFMDDVE LQRGEYISPE LLNAIETSKI LIVVLTKDYA SSAWCLDELV HIMKSHKNNP 0101: SHMVFPIFLY VDPSDIRWQQ GSYAKSFSKH KNSHPLNKLK DWREALTKVA NISGWDIKNR NEAECIADIT REILKRLPCQ YLHVPSYAVG LRSRLQHISS 0201: LLSIGSDGVR VIVIYGMGGI GKTTLAKVAF NEFSHLFEGS SFLENFREYS KKPEGRTHLQ HQLLSDILRR NDIEFKGLDH AVKERFRSKR VLLVVDDVDD 0301: VHQLNSAAID RDCFGHGSRI IITTRNMHLL KQLRAEGSYS PKELDGDESL ELFSWHAFRT SEPPKEFLQH SEEVVTYCAG LPLAVEVLGA FLIERSIREW 0401: ESTLKLLKRI PNDNIQAKLQ ISFNALTIEQ KDVFLDIACF FIGVDSYYVA CILDGCNLYP DIVLSLLMER CLITISGNNI MMHDLLRDMG RQIVREISPK 0501: KCGERSRLWS HNDVVGVLKK KSGTNAIEGL SLKADVMDFQ YFEVEAFAKM QELRLLELRY VDLNGSYEHF PKDLRWLCWH GFSLECFPIN LSLESLAALD 0601: LQYSNLKRFW KAQSPPQPAN MVKYLDLSHS VYLRETPDFS YFPNVEKLIL INCKSLVLVH KSIGILDKKL VLLNLSSCIE LDVLPEEIYK LKSLESLFLS 0701: NCSKLERLDD ALGELESLTT LLADFTALRE IPSTINQLKK LKRLSLNGCK GLLSDDIDNL YSEKSHSVSL LRPVSLSGLT YMRILSLGYC NLSDELIPED 0801: IGSLSFLRDL DLRGNSFCNL PTDFATLPNL GELLLSDCSK LQSILSLPRS LLFLDVGKCI MLKRTPDISK CSALFKLQLN DCISLFEIPG IHNHEYLSFI 0901: VLDGCKLAST DTTINTMLEN WLKRNHECIY IPVDRPNVIP NWVYFEEEKR SFSITVPETD NSDTVVGFTL WMNFVCPMGY SSIYPRAIIV RNLTRGSAWI 1001: HSLKNSKIRI QMNANLLTND FHIVTGDEIE VDVDCDDRFT ILATGIALCY KARDSSDFSF GDIKFTYEED DLGYASNGIY LDCHRSKYGH DSLQAVVHWK 1101: ISYPMDGETS NLFACSFFPG ISRYQENNQP VVDVEESNHR PRRKMRMSLW KILGAIGFLT LVVVLEVYFE LLSSIFANST TDYIMLPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)