suba logo
AT5G36260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.882
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G65240.1); Has 4213 Blast hits to 4200 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1149; Fungi - 904; Plants - 1912; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G36260-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:BT023424EMBL:CP002688EnsemblPlants:AT5G36260EnsemblPlants:AT5G36260.1
entrez:833623Gene3D:2.40.70.10GeneID:833623GO:GO:0004190GO:GO:0016021GO:GO:0031225Gramene:AT5G36260.1
hmmpanther:PTHR13683hmmpanther:PTHR13683:SF287HOGENOM:HOG000006100InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861
InterPro:IPR033121KEGG:ath:AT5G36260MEROPS:A01.A58OMA:FIMQSETPANTHER:PTHR13683Pfam:PF14541Pfam:PF14543
Pfscan:PS51767PhylomeDB:Q4V3D2PRINTS:PR00792PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_198475.2SMR:Q4V3D2
STRING:3702.AT5G36260.1SUPFAM:SSF50630TAIR:AT5G36260TMHMM:TMhelixUniGene:At.30549UniProt:Q4V3D2
Coordinates (TAIR10) chr5:-:14285068..14288179
Molecular Weight (calculated) 51983.90 Da
IEP (calculated) 4.90
GRAVY (calculated) 0.01
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTTMDPSRI SRIVAVVFVL VIQVVSGNFV FNVTHKFAGK EKQLSELKSH DSFRHARMLA NIDLPLGGDS RADSIGLYFT KIKLGSPPKE YYVQVDTGSD
101: ILWVNCAPCP KCPVKTDLGI PLSLYDSKTS STSKNVGCED DFCSFIMQSE TCGAKKPCSY HVVYGDGSTS DGDFIKDNIT LEQVTGNLRT APLAQEVVFG
201: CGKNQSGQLG QTDSAVDGIM GFGQSNTSII SQLAAGGSTK RIFSHCLDNM NGGGIFAVGE VESPVVKTTP IVPNQVHYNV ILKGMDVDGD PIDLPPSLAS
301: TNGDGGTIID SGTTLAYLPQ NLYNSLIEKI TAKQQVKLHM VQETFACFSF TSNTDKAFPV VNLHFEDSLK LSVYPHDYLF SLREDMYCFG WQSGGMTTQD
401: GADVILLGDL VLSNKLVVYD LENEVIGWAD HNCSSSIKVK DGSGAAYQLG AENLISAASS VMNGTLVTLL SILIWVFHSF TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)